Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_O06
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   1.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   4.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.8  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -1

Query: 186 TENYLSMITFELMYPPSLTQLLYYILCLKPY 94
           T+ Y+S + ++++  P++    +YI C +PY
Sbjct: 194 TDYYIS-VEWDIIKVPAVRNEAFYICCEEPY 223


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 174 LSMITFELMYPPSLTQLLYYILCLKPYM 91
           LS +T  L Y P  +  LYY+  ++P+M
Sbjct: 259 LSPVTNNLYYSPLTSHSLYYV-NMEPFM 285


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 174 LSMITFELMYPPSLTQLLYYI 112
           LS +T  L Y P L+  LYY+
Sbjct: 261 LSPVTNNLYYSPLLSHGLYYV 281


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 174 LSMITFELMYPPSLTQLLYYILCLKPYM 91
           LS +T  L Y P  ++ LYY+   KP+M
Sbjct: 259 LSPMTNNLYYSPLSSRSLYYV-NTKPFM 285


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 444 LSTTFVFKRKCGVAL 400
           +ST F F R CG+ L
Sbjct: 329 ISTYFTFTRPCGITL 343


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 425 KTNVVESLDFLALRTNDGRVSGKR 496
           K N+ ES D   L  +DGRV GKR
Sbjct: 50  KQNLHESDD---LHESDGRVGGKR 70


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 201 SQTMETENYLSMITFELMYPPSLTQLLYYILCLKPY 94
           S+  +  NY +   F+L+   +   + YY  C +PY
Sbjct: 165 SEQGDVSNYQANGEFDLVNFSARRNVEYYSCCPEPY 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,957
Number of Sequences: 438
Number of extensions: 4058
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)