Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_N22
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 303 1e-83
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 175 5e-45
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 170 1e-43
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 149 3e-37
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 89 7e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 85 6e-18
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 79 7e-16
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 66 4e-12
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 45 8e-06
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.25
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 4.1
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.1
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 7.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 303 bits (744), Expect = 1e-83
Identities = 139/151 (92%), Positives = 146/151 (96%)
Frame = +1
Query: 199 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP 378
+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 43 IMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHP 102
Query: 379 VLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 558
LLTEAPLNPK+NREKMTQI+FETFN+PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HT
Sbjct: 103 CLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHT 162
Query: 559 VPIYEGYALXHAILRLDLAGRDLTDYLMXIL 651
VPIYEGYAL HAI+RLDLAGRDLTDYLM IL
Sbjct: 163 VPIYEGYALPHAIMRLDLAGRDLTDYLMKIL 193
Score = 84.2 bits (199), Expect = 1e-17
Identities = 35/41 (85%), Positives = 40/41 (97%)
Frame = +3
Query: 75 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 197
++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHG 42
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 175 bits (426), Expect = 5e-45
Identities = 77/144 (53%), Positives = 109/144 (75%)
Frame = +1
Query: 220 KDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 399
KD VGDEA++ R +L +KYP+E+GII ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 400 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGY 579
+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE
Sbjct: 110 MNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESV 169
Query: 580 ALXHAILRLDLAGRDLTDYLMXIL 651
L H + RLD+AGRD T YL+ +L
Sbjct: 170 VLNHLVGRLDVAGRDATRYLISLL 193
Score = 46.8 bits (106), Expect = 3e-06
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = +3
Query: 87 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 185
A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 170 bits (414), Expect = 1e-43
Identities = 78/148 (52%), Positives = 109/148 (73%), Gaps = 1/148 (0%)
Frame = +1
Query: 199 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEH 375
VM QKD +VG EAQ+ RG+L ++ PIE GII NW DME+IW + + ++ L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 376 PVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 555
P+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H
Sbjct: 107 PLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTH 166
Query: 556 TVPIYEGYALXHAILRLDLAGRDLTDYL 639
+VPIY+G+++ AI + ++ GRD+TDYL
Sbjct: 167 SVPIYDGFSIPSAIQQEEIGGRDVTDYL 194
Score = 52.8 bits (121), Expect = 4e-08
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +3
Query: 81 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 194
D + +DNGSG KAGFAGDD P+ +FP+ VGR +H+
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHE 45
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 149 bits (362), Expect = 3e-37
Identities = 78/183 (42%), Positives = 111/183 (60%), Gaps = 12/183 (6%)
Frame = +1
Query: 139 ATTRPAPSSRPSWVALATRXVMVGMGQK---DSYVGDEAQSKRGI-LTLKYPIEHGIITN 306
A++ PA SS+PS++A + D ++G++A K +L YPI HG I N
Sbjct: 42 ASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIEN 101
Query: 307 WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQA 486
WD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE+FN +Y+A+QA
Sbjct: 102 WDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQA 161
Query: 487 VLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALXHAILRLDLAGRDLTDYLM 642
VL+L AS + TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++
Sbjct: 162 VLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQ 221
Query: 643 XIL 651
+L
Sbjct: 222 SLL 224
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +3
Query: 93 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 176
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 88.6 bits (210), Expect = 7e-19
Identities = 44/149 (29%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Frame = +1
Query: 211 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 387
+ + + VG++ + G ++ + P E +I+NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 388 TEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTV 561
TE NP R MT+++FE +N+P++ I + S Y + + ++GIVL+ G+ SH +
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVI 180
Query: 562 PIYEGYALXHAILRLDLAGRDLTDYLMXI 648
P+ G + R+ G + YL+ +
Sbjct: 181 PVLNGERILSEAKRISWGGSQSSSYLLKL 209
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/58 (36%), Positives = 34/58 (58%)
Frame = +3
Query: 15 AAVESIPASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 188
A E + + PT + F+ +D+ LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 5 AVREPVFSGPTPS---FQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 85.4 bits (202), Expect = 6e-18
Identities = 43/129 (33%), Positives = 65/129 (50%)
Frame = +1
Query: 265 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 444
+ +K I +G + NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 445 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALXHAILRLDLAGRD 624
E+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L +G
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNA 182
Query: 625 LTDYLMXIL 651
+ D L L
Sbjct: 183 INDILAQTL 191
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +3
Query: 78 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGRDGR--YGPERLLRG*RGPE 251
D+V+A+V+D GS + GF+G+D P+ V PS G + DGR +G E + + G E
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG----EFSDGRRLFGEEYIYKSNPGME 64
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 78.6 bits (185), Expect = 7e-16
Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 2/135 (1%)
Frame = +1
Query: 220 KDSYVGDEAQSKRGI--LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 393
++ YV DE Q I + +K +GII +W+ W +L+V P E+ +++TE
Sbjct: 49 RNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108
Query: 394 APLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 573
NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D G + P+ +
Sbjct: 109 PSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVD 168
Query: 574 GYALXHAILRLDLAG 618
G + I + LAG
Sbjct: 169 GLIIRKGIFKQSLAG 183
Score = 34.3 bits (75), Expect = 0.016
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 78 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 179
+++ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 66.1 bits (154), Expect = 4e-12
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Frame = +1
Query: 280 PIEHGIITNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 447
PI+ G + +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 448 TFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALXHAILRLDLAGRDL 627
P +A + ++ LYA G G+V+D G + PI +G + A +L L GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 628 TDYLMXIL 651
T +L +L
Sbjct: 232 TQHLQNLL 239
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 45.2 bits (102), Expect = 8e-06
Identities = 36/160 (22%), Positives = 68/160 (42%), Gaps = 18/160 (11%)
Frame = +1
Query: 229 YVGDEAQSKRGILTLKYPIEH--GIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEA 396
++G+E + TL++ H G + +W +W N + P ++ +LLT+
Sbjct: 43 FLGNELANCNDFTTLQFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQP 102
Query: 397 PLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTG--------------IVLD 534
+ Q++FE F A A L + G T +V+D
Sbjct: 103 VFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVID 162
Query: 535 SGDGVSHTVPIYEGYALXHAILRLDLAGRDLTDYLMXILT 654
SG +H +P+ + A+ R+D+ G+ LT+YL +++
Sbjct: 163 SGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVIS 202
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 30.3 bits (65), Expect = 0.25
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 340 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNSPAM---YVAIQ 483
+Y L E+HP+LLT+ A L P+ + ++ +I ++ N+P + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -1
Query: 303 GDDTVLDGVLQSEDTSLALGLVTHVGVFLAHTDHHXPG 190
GDD+VLD V +D L L AH D H G
Sbjct: 676 GDDSVLDTVTAGKDVYAFLNLFFAKFPQYAHLDFHIAG 713
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 382 LLTEAPLNPKANREKMTQIMFETFN 456
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 184 LATRXVMVGMGQKDSYVGDEAQSKRGILTLKYPI 285
L+ +M+G +Y+G AQ KR +LT + I
Sbjct: 160 LSQYAIMIGAIHGFAYIGLAAQGKRALLTARVTI 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,130
Number of Sequences: 5004
Number of extensions: 47735
Number of successful extensions: 198
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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