Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_N21
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom...    27   3.1  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    26   5.5  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    26   5.5  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    26   5.5  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   7.3  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    25   9.6  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    25   9.6  
SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|c...    25   9.6  

>SPCC306.06c |||ER membrane protein, BIG1 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -3

Query: 438 IKFPLTRILPFHVLSCFS*RFDEFHSAQASCSFCELILNASFNSKPEPSIDTSTYLYSSI 259
           ++ P + +LP+   S  S      HSA+ +C    + L  SFN+ P    D  T +Y + 
Sbjct: 90  LQSPYSLLLPYSKESLDSQEL--VHSAKQNCDVEVVYLGGSFNAFPPLQNDRITVVYMNE 147

Query: 258 LT 253
           L+
Sbjct: 148 LS 149


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 257 KMEEYKYVDVSIEGSGLELNDAFKISSQNEQLAWA 361
           + ++YK  +VS    GL LND   + + +  L +A
Sbjct: 302 RKQQYKMFEVSFTDQGLNLNDTGTLETYSRLLLFA 336


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 239 PPSIIVKMEEYKYVDVSIEGSGLELNDAFKIS 334
           P ++IVK  +++Y  V+ E  GL++ D    S
Sbjct: 522 PEAVIVKNSKFRYQQVAPETFGLDILDILNAS 553


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 373 VEPLREARQHVEGQDTRQWKFYR*DKLGTGS 465
           + P R+A+ + + Q    + FY  DK  TGS
Sbjct: 181 LSPFRDAKGNYDWQKELDYSFYMLDKQSTGS 211


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 236 SPPSIIVKMEEYKYVDVSIEGSGLELNDAFKISSQN 343
           SPP + V   +   +  SI  S  +  D F  SSQ+
Sbjct: 80  SPPELSVHSAQQPLIPTSIASSSAQTGDTFSGSSQS 115


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 235 LASKYNRQNGRIQIRGCI 288
           +ASKYN+   +I IR C+
Sbjct: 205 IASKYNKSEAQIMIRYCL 222


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 20/68 (29%), Positives = 28/68 (41%)
 Frame = +2

Query: 191 LWVICQNVPRLTAVFSPPSIIVKMEEYKYVDVSIEGSGLELNDAFKISSQNEQLAWAEWN 370
           LWV   N P +T +      +   +EY  V +     G E+ D       N  +A A  N
Sbjct: 93  LWVPT-NTP-ITTLADDAEELALAKEYWKVKIVCRSMGSEIYDLCWSVDSNFLIAGAMDN 150

Query: 371 SSNLYEKH 394
           S  LY+ H
Sbjct: 151 SLRLYDAH 158


>SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 455 VLEVKRGADTFSVTNGTVPVVITRVERVIDTIFTTSVAVFIALIFINF 598
           V+E  + ADT +  +  +P V+  V       F  ++A+F  L+F NF
Sbjct: 54  VMEASKVADTRTAWSTKIPAVLLPV-------FVINIALFKYLVFANF 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,144
Number of Sequences: 5004
Number of extensions: 59922
Number of successful extensions: 224
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)