Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_N20
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    93   9e-21
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             26   2.1  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   3.7  
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    25   4.9  
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    24   6.4  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   6.4  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    24   8.5  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 93.5 bits (222), Expect = 9e-21
 Identities = 41/66 (62%), Positives = 54/66 (81%)
 Frame = -2

Query: 327 ENQVRTIEMEGLXWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVD 148
           E  VR+I+M+GL WG SKLVPVG+G+NK QI  V+EDDKVS++ L E+++ FED+VQS D
Sbjct: 148 EKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDKVSLEALQEELEGFEDYVQSTD 207

Query: 147 IAAFNK 130
           IAA +K
Sbjct: 208 IAAMSK 213


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 252 INKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSVDIAAFNK 130
           INK Q+M   E ++ ++DLL++   EF   + + D+    K
Sbjct: 151 INKWQVMTAFELNEENLDLLSQYCSEF--LIHAADVEGLCK 189


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -2

Query: 219 DDKVSVDLLTEKIQEFEDFVQSVDIAAFNK-X*TAITCNIFISATFS 82
           +++     + +K++ F+D + S+D + F+    +AIT ++  +AT S
Sbjct: 404 EEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLS 450


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 97  YKYITCYGCLXFVKCSNVNRLYKIFKFLNFFCQQINRNFVVLDDTHNLQFIYAI 258
           ++ ITC   L  +   N N +Y   + +      I ++   L D H   FIY I
Sbjct: 80  HRNITCIYDLDIINPYNFNEVYIYEELMEADLNAIIKSGQPLTDAHFQSFIYQI 133


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 279 SKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIQEFEDFVQSV 151
           S    +GY  +K+ I    E  + SV   TE  Q F+DF+  V
Sbjct: 34  SSFYVLGYARSKIPIGEFRESIRESVKPDTESKQVFQDFIDRV 76


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 12/55 (21%)
 Frame = +1

Query: 112 CYGCLXFVKCSN-VNRLYKI-FKF----------LNFFCQQINRNFVVLDDTHNL 240
           C+     +KCSN VN  Y + F F          LN+  Q+I  N ++L ++HN+
Sbjct: 115 CFSRANPIKCSNQVNTQYSVSFLFTIMASVLISVLNYISQKIFLNGLILGNSHNV 169


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 298 RPXXGSLQTCACWVWH 251
           RP   S+ T   WVWH
Sbjct: 180 RPWKESITTAVRWVWH 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,203,228
Number of Sequences: 5004
Number of extensions: 21173
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)