Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_N20
         (367 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    23   1.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   4.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   6.0  

>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 353 ETRIWKGNGKTKYALLK 303
           E RIW+ +  TK +LLK
Sbjct: 110 ERRIWRDDALTKLSLLK 126


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 88  GCTYKYITCYGCLXFVKCS-NVNRLYK 165
           G  Y  +TC GC  F + S   N +Y+
Sbjct: 196 GYHYNALTCEGCKGFFRRSITKNAVYQ 222


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 336 LPYPGFPP 359
           +PYP FPP
Sbjct: 75  MPYPRFPP 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,037
Number of Sequences: 438
Number of extensions: 1615
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)