Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_N17
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 33 0.047
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 31 0.14
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 28 1.3
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.1
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 27 3.1
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr... 26 4.1
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 5.4
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 26 5.4
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 5.4
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 26 5.4
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 7.2
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 7.2
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 25 7.2
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 25 9.5
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 32.7 bits (71), Expect = 0.047
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +2
Query: 158 FRTALPQFLAVSVKNLLLLGYGMTLGFTTILIPAVEKPKEGEVLYLEKSEISWISSIN-L 334
F+ +PQ V ++ ++L P VE PK G+VL + E I ++N L
Sbjct: 229 FQDDIPQTWLVEFSSVCQAAESISLIAVNNNRPPVELPKSGDVLSNREWEAGKIDAMNSL 288
Query: 335 IVVPLGCAVSGIVTTPIGRRRSMQVVNLP 421
I L + S + +P+ S V N P
Sbjct: 289 IAQNLHTSASQVSLSPMASTASSSVTNSP 317
>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 138
Score = 31.1 bits (67), Expect = 0.14
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 76 IFIKTNGARHRSSWRWCNVCTLCI-QKGFSHSSSPIFSCERK 198
+F+ + RH + RWC+ CT+ I ++ F + + C RK
Sbjct: 5 LFLYFDAIRHANQRRWCHECTIKIFRRSFDIARHTVHLCVRK 46
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 245 ILIPAVEKPKEGEVLYLEKSEISWISSINLI 337
+L PA+ PK G+ +E SE+S +SS +I
Sbjct: 139 LLAPALSYPKSGKSNLIETSELSCLSSSPMI 169
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 266 KPKEGEVLYLEKSEISWISSINLIVVPLGCAVSGIVTTPIGRRRSMQVVNL 418
KP +LY KSE S I+ GC + GIV P+ S + + L
Sbjct: 149 KPGTRVILYYRKSEAS-----EYIISIFGCLLLGIVVIPLSPSSSSESLKL 194
>SPBC56F2.11 |met6||homoserine
O-acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 402 IERRRPMGVVTMPDTAHPSGTTIKFIELIQE 310
+E + P+ + D+ HPS KF++LI +
Sbjct: 1 MESQSPIESIVFTDSCHPSQQENKFVQLISD 31
>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +1
Query: 229 LGFYDYTYSRCRETKRGRSFIFRKI*DFLDKFNKLDSRATGVCSIRHSH----DTHWSPT 396
L F + S K G + +F+++ + ++ K + +TG +RH H T+
Sbjct: 23 LAFKGHLLSHDYRGKNGPACLFKRVENVIEMEPKTEQMSTGRFIVRHIHCCRCHTYIGWK 82
Query: 397 FYASCEPS 420
+ +S EPS
Sbjct: 83 YVSSYEPS 90
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 323 SINLIVVPLGCAVSGIVTTPIGR 391
+I+ +V GC ++G+V PI R
Sbjct: 231 AIDFVVSLFGCFIAGVVAVPINR 253
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 379 THWSPTFYASCEPSILYSLVT 441
T+W T Y S +P +LY++ T
Sbjct: 194 TNWDATSYGSPKPHVLYTIPT 214
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 248 LIPAVEKPKEGEVLYLEKS 304
L AV K KE EVLY+EKS
Sbjct: 1686 LADAVVKQKEYEVLYVEKS 1704
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 197 LRSQLKIGEELCENPFCIHNVHTLHHLQLLLCRAPFV 87
L LK + ENP+ I +V + HLQL A F+
Sbjct: 160 LTKSLKDFSRVSENPYHITSVPNVEHLQLTFPEAFFL 196
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -3
Query: 333 KFIELIQEISDFSKYKT 283
KF+ELI+E+ +FSK +T
Sbjct: 751 KFLELIRELVEFSKEET 767
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = -3
Query: 639 IKGPNKNWV----KTPISMHIELVAVQXPSKMWL 550
+K N +W+ P SMH+ ++ P+K WL
Sbjct: 1498 VKTENNSWIFKSIGQPGSMHLRPISTPYPTKEWL 1531
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 25.4 bits (53), Expect = 7.2
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = -1
Query: 149 CIHNVHTLHHLQLLLCR 99
C+HN+H ++H++ L+ +
Sbjct: 203 CMHNIHPIYHIKELMIK 219
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Frame = +1
Query: 124 CNVCTLCIQKGFSHSSSPIFSCERKEPSITGL--W----HDLGFYDYTYSRCRETKRG 279
CN+C CI F+H + + E E I+G W +LG + RE RG
Sbjct: 440 CNLCAACIIFLFAHETKGLTLEEINELYISGAKPWMPRPKNLGNFTKQQEEVREKSRG 497
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,241
Number of Sequences: 5004
Number of extensions: 62096
Number of successful extensions: 192
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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