Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_N17
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0152 + 28044733-28045032,28045131-28045220,28045770-280458... 40 0.001
05_07_0151 + 28038178-28038480,28038578-28038667,28039130-280391... 40 0.001
05_07_0239 - 28599452-28599564,28599685-28599799,28600051-286001... 37 0.012
03_02_0649 - 10162202-10162366,10162455-10162533,10162614-101626... 31 1.1
02_02_0424 + 10074206-10074287,10074389-10074485,10074584-100746... 30 1.4
02_04_0321 + 22020126-22020431,22020520-22021626 30 1.8
11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141... 29 2.4
02_05_1086 + 33994295-33994402,33994485-33994674,33994734-339947... 29 4.2
07_03_1345 + 25919379-25920866,25921342-25921962,25922733-259228... 28 5.6
03_03_0039 - 13986844-13986907,13987219-13987273,13987492-139876... 28 7.4
08_02_0926 - 22680661-22680765,22680935-22681084,22681473-22682294 27 9.8
06_03_0472 + 21145523-21145892,21146098-21146141,21146916-211469... 27 9.8
04_01_0276 + 3658852-3660894 27 9.8
>05_07_0152 +
28044733-28045032,28045131-28045220,28045770-28045829,
28045912-28045977,28046161-28046226,28046330-28046405,
28046721-28046785,28046879-28046971,28047302-28047322,
28047600-28047692,28047939-28047998,28048157-28048222,
28048314-28048373,28048498-28048612,28048738-28048850
Length = 447
Score = 40.3 bits (90), Expect = 0.001
Identities = 33/156 (21%), Positives = 60/156 (38%)
Frame = +2
Query: 179 FLAVSVKNLLLLGYGMTLGFTTILIPAVEKPKEGEVLYLEKSEISWISSINLIVVPLGCA 358
FL + L + +G T GF++ A+ + L L SE S S++ + +G
Sbjct: 63 FLCTLIVALGPIQFGFTGGFSSPTQDAIIRD-----LDLTLSEFSVFGSLSNVGAMVGAI 117
Query: 359 VSGIVTTPIGRRRSMQVVNLPFFIAWLLFHFSTSTGHXXXXXXXXXXXXXXXKHLY*RMW 538
SG + IGR+ S+ + +P I WL F+ + +
Sbjct: 118 ASGQMAEYIGRKGSLMIAAIPNIIGWLAISFAKDSSFLYMGRLLEGFGVGVISYTVPVYI 177
Query: 539 QK*HNHIFXGXWTATNSMCILIGVFTQFLFGPFMFW 646
+ G + N + + +G+ +L G F+ W
Sbjct: 178 AEISPQNMRGALGSVNQLSVTVGILLAYLLGMFVPW 213
>05_07_0151 +
28038178-28038480,28038578-28038667,28039130-28039189,
28039274-28039339,28039562-28039627,28039719-28039794,
28039972-28040036,28040115-28040192,28040362-28040442,
28040526-28040610,28040702-28040748,28040969-28041028,
28041179-28041244,28041327-28041386,28041524-28041638,
28041733-28041845
Length = 476
Score = 40.3 bits (90), Expect = 0.001
Identities = 34/156 (21%), Positives = 60/156 (38%)
Frame = +2
Query: 179 FLAVSVKNLLLLGYGMTLGFTTILIPAVEKPKEGEVLYLEKSEISWISSINLIVVPLGCA 358
FL + L + +G T GF++ A+ + L L SE S S++ + +G
Sbjct: 64 FLCTLIVALGPIQFGFTSGFSSPTQDAIIRD-----LKLSISEFSAFGSLSNVGAMVGAI 118
Query: 359 VSGIVTTPIGRRRSMQVVNLPFFIAWLLFHFSTSTGHXXXXXXXXXXXXXXXKHLY*RMW 538
SG + IGR+ S+ + +P I WL F+ +
Sbjct: 119 ASGQMAEYIGRKGSLIIAAVPNIIGWLAISFAKDASFLYMGRLLEGFGVGVISYTVPVYI 178
Query: 539 QK*HNHIFXGXWTATNSMCILIGVFTQFLFGPFMFW 646
+ + G + N + + IG+ +L G F+ W
Sbjct: 179 AEISHQNTRGALGSVNQLSVTIGILLAYLLGMFVPW 214
>05_07_0239 -
28599452-28599564,28599685-28599799,28600051-28600116,
28600270-28600329,28600571-28600617,28601118-28601202,
28601554-28601646,28601727-28601791,28601942-28602017,
28602110-28602175,28603082-28603141,28603400-28603489,
28603594-28603893
Length = 411
Score = 37.1 bits (82), Expect = 0.012
Identities = 23/79 (29%), Positives = 37/79 (46%)
Frame = +2
Query: 218 YGMTLGFTTILIPAVEKPKEGEVLYLEKSEISWISSINLIVVPLGCAVSGIVTTPIGRRR 397
+G T GF++ A+ L L SE S S++ + +G SG + IGR+
Sbjct: 76 FGFTCGFSSPTQDAIISD-----LGLTLSEFSLFGSLSNVGAMVGAIASGQIAEYIGRKG 130
Query: 398 SMQVVNLPFFIAWLLFHFS 454
S+ + +P I WL F+
Sbjct: 131 SLMIAAIPNIIGWLAISFA 149
>03_02_0649 -
10162202-10162366,10162455-10162533,10162614-10162670,
10162741-10162847,10163365-10163580,10163690-10163734,
10164100-10164258,10164714-10164818,10164902-10165084,
10165490-10165546,10165625-10165720,10166970-10167104,
10167188-10167262,10167380-10167479,10167682-10167842,
10167921-10168068,10168706-10169111,10169794-10169860,
10169953-10170162,10170570-10170711,10170809-10170870,
10170965-10171037,10171876-10171985,10172087-10172227
Length = 1032
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +1
Query: 382 HWSPTFYASCEPSILYSLVTISLLNQYRTFICSSVFNGFSWRSPEAPVLTYVAEITQPHL 561
H SP Y + E S L+ I LL+ RTFI S +N P+L Y ++ P+
Sbjct: 655 HTSPA-YKTWEESSGECLLQIELLDAIRTFISSLGYNSPLCYGMVLPILQYGMDVDSPNA 713
Query: 562 RXXLD 576
L+
Sbjct: 714 LNLLE 718
>02_02_0424 +
10074206-10074287,10074389-10074485,10074584-10074651,
10074727-10074859,10075102-10075137,10076109-10076208,
10076312-10076424,10076511-10076604,10077301-10077454,
10077563-10077706,10077802-10077875,10077949-10078037,
10078311-10078365,10078563-10078616
Length = 430
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 347 LGCAVSGIVTTPIGRRRSMQVVNLPFFI 430
+GC SG + IGRRR+ Q+ LP I
Sbjct: 95 VGCLFSGSIADGIGRRRAFQLSALPMII 122
>02_04_0321 + 22020126-22020431,22020520-22021626
Length = 470
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 311 SWISSINLIVVPLGCAVSGIVTTPIGRRRSMQVVNLPFFIAWLL 442
+++SS+ L V C ++G VT +GRR SM + FF+ +L
Sbjct: 34 TFVSSLYLAGV-FACLIAGHVTRRVGRRNSMLIGASLFFVGAIL 76
>11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,
1414639-1414725,1416244-1416411,1416785-1416958,
1417662-1417720,1418132-1420154,1420549-1420647,
1420998-1421796,1422101-1422120,1422446-1422513
Length = 1827
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 337 SRATGVCSIRHSHDTHWSPTFYASCEPSILYSLVTIS--LLNQYRTFICSSVFNGFSWRS 510
+R+ V + + D+ W PTFY + +Y + +L+ R +C S+FN S
Sbjct: 1120 ARSGSVALAKGAKDSKWRPTFYLRVKFKKIYMAFGANDIVLHIKRLMLCPSLFNFLLSSS 1179
Query: 511 P 513
P
Sbjct: 1180 P 1180
>02_05_1086 +
33994295-33994402,33994485-33994674,33994734-33994789,
33995413-33995550,33995655-33995848,33996125-33996467
Length = 342
Score = 28.7 bits (61), Expect = 4.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 337 SRATGVCSIRHSHDTHW 387
S+ G C +RH H+ HW
Sbjct: 62 SKVAGPCLVRHEHEMHW 78
>07_03_1345 + 25919379-25920866,25921342-25921962,25922733-25922893,
25923284-25923422,25923509-25923592,25923944-25923982,
25924037-25924222,25924347-25924478,25924810-25925009,
25925294-25925498,25925618-25925944
Length = 1193
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 355 CSIRHSHDTHWSPTFYASCEPSILYSLVTISLLNQYRTFICSSV 486
C I ++ D S T + C Y +T LLN R F C++V
Sbjct: 1133 CCICYNSD---SDTTFEPCHHRSCYGCITRHLLNSQRCFFCNAV 1173
>03_03_0039 - 13986844-13986907,13987219-13987273,13987492-13987606,
13987652-13987774,13987962-13988015,13988352-13988411,
13988522-13988584,13988790-13988863,13989177-13989261,
13989376-13989456,13989764-13989856,13990275-13990339,
13990407-13990482,13990570-13990635,13991094-13991153,
13991233-13991322,13991755-13991817,13992502-13992625,
13993031-13993271,13993355-13993624,13993715-13994089,
13994178-13994381,13994455-13995136,13995231-13995279,
13995362-13995488,13995564-13996258,13996718-13996965
Length = 1433
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = +2
Query: 293 LEKSEISWISSINLIVVPLGCAVSGIVTTPIGRRRSMQVVNLPFFIAWLLFHFS 454
L SE S+ I +G SG + +GR+ +M + + + W +F+
Sbjct: 1022 LSNSEYGVFGSVLTIGAMIGALTSGRLADSLGRKTTMGLAAIIGIVGWFTIYFA 1075
>08_02_0926 - 22680661-22680765,22680935-22681084,22681473-22682294
Length = 358
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -1
Query: 146 IHNVHTLHHLQLLLCRAPFVLMNITNLDKISAVDSEWG 33
+ NVH+ HH ++ R P NI +L +I AVD ++G
Sbjct: 196 LDNVHSFHHSEVWFVRGP----NIRSL-RIWAVDQDFG 228
>06_03_0472 +
21145523-21145892,21146098-21146141,21146916-21146974,
21147090-21147162,21147281-21147342,21147424-21147499,
21147618-21147692,21148699-21148782,21148947-21149015,
21149614-21149673,21150211-21150288,21150468-21150556,
21150868-21150964,21151084-21151137,21151643-21151738,
21151930-21152118,21152200-21152277,21152511-21152555,
21152728-21152820,21152907-21152987
Length = 623
Score = 27.5 bits (58), Expect = 9.8
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +2
Query: 182 LAVSVKNLLLLGYGMTLGFT--TILIPAVEKPKEGEVLYLEKSEISWISSIN--LIVVPL 349
L ++VK ++ G++ T L+ + + GE ++ S S I I L ++ L
Sbjct: 500 LVITVKTFIVAVVVKGFGYSNKTSLLVGMSLAQIGEFAFVLLSRASSIHLIEGKLYLLLL 559
Query: 350 GCAVSGIVTTPIGRRRSMQVVNLPFFIAW 436
G +VTTP+ + VV+L + W
Sbjct: 560 GTTALSLVTTPLLFKMIPAVVHLGVLLRW 588
>04_01_0276 + 3658852-3660894
Length = 680
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 311 SWISSINLIVVPLGCAVSGIVTTPIGRRRSMQVVNLPFFIAWLLFHFSTST 463
+W + I L+++ L + ++ I RR+S VV + FI WL + + ST
Sbjct: 11 AWGTQI-LVLLSLTLQILLLLFAGIRRRKSSAVVAVLRFILWLAYQLADST 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,351,631
Number of Sequences: 37544
Number of extensions: 381656
Number of successful extensions: 940
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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