Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_N17
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    25   0.84 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   1.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.5  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 119 LQLLLCRAPFVLMNITNLDKISAVDSEWGFL 27
           L+  L    F+  +I   D+ +A D +WGF+
Sbjct: 451 LEKALHNVMFIQHHIQRQDEFNAEDQDWGFV 481


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 319 KFNKLDSRATGVCSIRHSHDTHWSPTFYASCEPS 420
           KF+ +      +   +   D  W+PT Y S EPS
Sbjct: 76  KFSNIAPYLNQIYGGQFVRDLIWTPTVYVSNEPS 109


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 397 FYASCEPSILYSLVTISLLNQYRTFIC--SSVFNGFSWRSPEAPV 525
           ++++    ILY+L++I   N ++  IC  + +    SW + E+ +
Sbjct: 318 YFSTTINPILYNLMSIKYRNAFKQTICCKTRIIGRRSWVTRESQI 362


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = +1

Query: 403 ASCEPSILYSLVTISLLNQYRTFICSSVFNGFS 501
           +SC   +  SL+  +++N Y   + +    G+S
Sbjct: 281 SSCSVFVFLSLMEFAVVNNYMGPVATKAMKGYS 313


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 395 RSMQVVNLPFFIAWLLFH 448
           R +  V + FFI W  FH
Sbjct: 260 RMLSAVVITFFICWAPFH 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,790
Number of Sequences: 438
Number of extensions: 4293
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)