Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_N10
(525 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch... 108 4e-25
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac... 108 4e-25
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 29 0.56
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 27 2.3
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 25 5.2
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 25 6.9
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 9.1
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 9.1
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 25 9.1
>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 108 bits (260), Expect = 4e-25
Identities = 48/87 (55%), Positives = 63/87 (72%)
Frame = +2
Query: 176 YDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSL 355
YDPDW+YVR AAI RHIY+R VGV + K++GG G+ PSH SGS+ RK +QSL
Sbjct: 48 YDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSL 107
Query: 356 EALKLVEKVQDGGRILTTQGRRDLDRI 436
E + ++EK +GGR ++ QG+RDLDRI
Sbjct: 108 EKIGVLEKSDNGGRRISQQGQRDLDRI 134
Score = 49.6 bits (113), Expect = 3e-07
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +1
Query: 43 VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*P 183
V+VKDV+ + + AA LK++GK+ P+ +D+VKT KELAP P
Sbjct: 4 VSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDP 50
>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 144
Score = 108 bits (260), Expect = 4e-25
Identities = 48/87 (55%), Positives = 63/87 (72%)
Frame = +2
Query: 176 YDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSL 355
YDPDW+YVR AAI RHIY+R VGV + K++GG G+ PSH SGS+ RK +QSL
Sbjct: 48 YDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSL 107
Query: 356 EALKLVEKVQDGGRILTTQGRRDLDRI 436
E + ++EK +GGR ++ QG+RDLDRI
Sbjct: 108 EKIGVLEKSDNGGRRISQQGQRDLDRI 134
Score = 50.8 bits (116), Expect = 1e-07
Identities = 23/47 (48%), Positives = 32/47 (68%)
Frame = +1
Query: 43 VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPX*P 183
V+VKDV+ K + AA LK++GK+ P+ +D+VKT KELAP P
Sbjct: 4 VSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDP 50
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 28.7 bits (61), Expect = 0.56
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 19 QHKARCVPVTVKDV-EQDKIVKTVAAHLKKTGKVKVPEHMDLVKTA 153
QH R VP+ + + E I K AA+ T +K PE +DL+ A
Sbjct: 795 QHGCRAVPLDGRVLCEPTTISKATAANYIMTHLIKNPEELDLILVA 840
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -1
Query: 162 FEASCLYKIHVLRYLDFARFF*VSSDSFNNLVLFNILYCDXNASCLVLTTG 10
F +S ++LR+L F+ F S+ S +N+ F +L +++T+G
Sbjct: 9 FTSSSSLPCYILRHLPFSNFNRYSTASHDNVNAFRLLMRRFAQPVVIITSG 59
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -3
Query: 274 TKDLGDSLDSNR*ANVNMTKDGSTTHIE 191
++D+G +L+ N+ +N+ TK+ S I+
Sbjct: 109 SQDVGQNLEDNQISNIGTTKEASNAPIK 136
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 25.0 bits (52), Expect = 6.9
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 40 PVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKE 165
P +D E DKI ++V HL K K + + L K KE
Sbjct: 81 PYDHEDEEADKIYQSVEEHLSKRRKSQREKQEQLQKEKYEKE 122
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 198 CVVLPSFVIFTFAHLLESRL 257
C+V S V+F AH+ E RL
Sbjct: 176 CIVSSSLVLFDNAHVTEGRL 195
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 24.6 bits (51), Expect = 9.1
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = +1
Query: 220 SYLHSLTCWSQDCHQDLWW 276
S+ + +T + Q CH++LW+
Sbjct: 1149 SFQNLVTVFCQSCHKELWY 1167
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 24.6 bits (51), Expect = 9.1
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = -3
Query: 424 VSSTLCGENATT----VLNFLNKLQCLQRLQSLAC 332
VSS C E T L+ +N ++C+ LQS+ C
Sbjct: 261 VSSKNCFEEPITPRFQALHRINMIECIPELQSVVC 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,935
Number of Sequences: 5004
Number of extensions: 38015
Number of successful extensions: 104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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