Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_N09
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.0  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    27   2.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.3  
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    27   3.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.5  
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...    25   9.5  
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.5  

>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 326 SKSARLITRQNNSNVKLYCFL-VSLLSPSAFSTTSNSWHMSVAYPSKTETNSSSQPYSLS 150
           S SA +++        +   +  S +S     TT+N+W+ S ++ S T +   S  YS S
Sbjct: 168 SSSASIVSSTYRDGPSIITLVSTSYVSEVVTPTTTNNWNSSSSFTSSTSSTPISSSYSSS 227


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 257 LLSPSAFSTTSNSWHMSVAYPSKTETNSSSQ 165
           LL P+  ST  N W  S+A    T+T ++S+
Sbjct: 20  LLRPAGRSTLRNVWRRSIATEHLTQTEANSR 50


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = -2

Query: 377 FFESIHKLAAKVSMECCSKSARLITRQNNSNVKLYCFLVSLLSPSAFSTTSNSWHMSVAY 198
           F E+IHK+    S    SKS+   ++   S   +     S +S ++ S++++S   +++ 
Sbjct: 314 FVEAIHKILDTKSKHSSSKSSHDSSQGLESTSSIALNPTSSISSTSSSSSTSSAISTISQ 373

Query: 197 P-SKTETNSSSQPYSLS 150
             +KT T+ S +P +++
Sbjct: 374 DHTKTVTSVSDEPTTIT 390


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -2

Query: 296 NNSNVKLYCFLVSLLSPSAFSTTSNSWHMSVAYPSKTETNSSSQPYSLSFDR 141
           N S +  Y  LV+L SP+  +  +  W+   A          + P S SF++
Sbjct: 112 NFSTIPSYKDLVNLRSPARLAEVAKKWNPETATQCILPLKGPNSPSSSSFEK 163


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 29/120 (24%), Positives = 55/120 (45%)
 Frame = -2

Query: 410 LTASLLLGSCIFFESIHKLAAKVSMECCSKSARLITRQNNSNVKLYCFLVSLLSPSAFST 231
           L++S +  S  F  S    ++ +S    S S+   +   +S+     F  ++   S+ S+
Sbjct: 321 LSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTV---SSSSS 377

Query: 230 TSNSWHMSVAYPSKTETNSSSQPYSLSFDRTAIK*TKGDITSNPSLNE*FWQRIFSSRSA 51
           TS+S   S +  S    +SSS   SLS  ++    +    +S+  ++  F+    SSRS+
Sbjct: 378 TSSSTLTSSSSSSSRPASSSSHSSSLSSHKS----SSSSKSSSAPVSSAFYHNSTSSRSS 433


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 163 GCDEEFVSVLDGYATDICQELLVVLKA 243
           GCD   VS   G   D   ELL+++ A
Sbjct: 50  GCDVYIVSPASGQVNDHLMELLIMISA 76


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 260 SLLSPSAFSTTSNSWHMSVAYPSKTETNSSSQP 162
           + + P  F  T+NS  ++V Y  KT     SQP
Sbjct: 111 TFIIPGHFPQTTNSPFINVTYILKTRVKIPSQP 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,296
Number of Sequences: 5004
Number of extensions: 56270
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)