Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_N09
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0566 - 4166511-4166632,4167302-4167375,4167509-4167648,416... 29 3.2
08_02_0802 + 21386248-21387468 29 4.2
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518... 29 4.2
06_03_0696 + 23617687-23617851,23618838-23619536 28 5.6
11_06_0724 - 26696401-26696703,26696875-26697025,26697115-266971... 28 7.4
07_03_1410 + 26363538-26363777,26365421-26365475,26365553-263656... 28 7.4
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 28 7.4
07_03_0715 + 20889399-20890111,20890950-20891060,20891128-208913... 27 9.8
>01_01_0566 -
4166511-4166632,4167302-4167375,4167509-4167648,
4167731-4167802,4167915-4167984,4168112-4168185,
4168316-4168487,4168887-4168976,4169151-4169175,
4169273-4169432,4169855-4170265,4170443-4170559
Length = 508
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/91 (21%), Positives = 36/91 (39%)
Frame = -2
Query: 419 KAKLTASLLLGSCIFFESIHKLAAKVSMECCSKSARLITRQNNSNVKLYCFLVSLLSPSA 240
KA A L+G I F + ++ E C+K A + T + N+ + V ++ +
Sbjct: 327 KAGYLAPGLMGVYIVFLCWTAIRSEPHTEICNKKAEVATSADWVNIASFVIAVIVIVTAT 386
Query: 239 FSTTSNSWHMSVAYPSKTETNSSSQPYSLSF 147
F+T +S + + PY F
Sbjct: 387 FATGIDSKCLQFKKAESEQPEDDDIPYGFGF 417
>08_02_0802 + 21386248-21387468
Length = 406
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +3
Query: 162 WLRRGIRFGLRRVCDGHMPGVARGTESARRQQRDQETVQFDV--GIILARDKTRRFR 326
W R + LR V P A + + D+ET+ F V ++ R TRRFR
Sbjct: 46 WTRTSLGLSLRAVLRLSSPATAASVGTCFDEDADEETLAFRVRPWLLWRRRGTRRFR 102
>05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,
5184024-5184143,5184247-5184375,5184466-5184591,
5185550-5185667,5186471-5186680,5186788-5187100,
5187467-5187560,5187760-5187868,5188322-5188593,
5188684-5188811,5188977-5189211,5189794-5189982,
5190069-5190349,5190431-5190698,5190719-5190961,
5191598-5191680,5192484-5192493
Length = 1366
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = -3
Query: 412 NSLRVYYW--DLVFSLKASTSWPLK*AWNVVLNRRVLSRARIIPTSNCTVSWSLCCR-RA 242
N+L Y W ++S+ S+PL +W RR L R R S S CR RA
Sbjct: 944 NALAAYQWWEGSIYSILCILSYPLAWSWQQWRRRRKLQRLREFVRSEYDHSCLRSCRSRA 1003
Query: 241 L 239
L
Sbjct: 1004 L 1004
>06_03_0696 + 23617687-23617851,23618838-23619536
Length = 287
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 144 IKRQAVWLRRGIRFGLRRVCDGHMPGVARGTESARRQQRDQETVQ 278
++R+ WLRR RF RR + + R E ARR+ Q+ ++
Sbjct: 234 VRRRVRWLRRVERFNQRRREEEAEAAMRREEEEARRKLEVQKVLE 278
>11_06_0724 -
26696401-26696703,26696875-26697025,26697115-26697184,
26697526-26697736,26697928-26698085,26698684-26699500
Length = 569
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 410 LTASLLLGSCIFFESIHKLAAKVSMECCSK--SARLITRQNNSNVKLYCFLV 261
LT L+LG C FF + +AA+ M C S +A I + N ++ FLV
Sbjct: 3 LTVLLILGCCFFFLPMPMVAAQPWMICGSSKYTANSIYQSNLDSLLSSSFLV 54
>07_03_1410 +
26363538-26363777,26365421-26365475,26365553-26365644,
26365732-26365787,26366026-26366101,26366790-26366856,
26367197-26367263,26368276-26368342,26368759-26368842,
26369749-26369904,26370641-26370718,26371323-26371391,
26371476-26371541,26371623-26371751,26372862-26372951,
26373306-26373371,26373768-26373836,26373903-26374007,
26374374-26374499,26374687-26374745,26374832-26374868,
26375370-26375519
Length = 667
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -1
Query: 255 VVAERFQYHEQLLAYVRRIP 196
V+A +FQYH++L+ V +IP
Sbjct: 120 VIAAKFQYHQKLVDAVHKIP 139
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 228 EQLLAYVRRIPV*DRNEFLVATIQLVV**NCNQIDKRRHNFESITE 91
+Q+ AYV R D + + VA + + C +D RH F+S+++
Sbjct: 651 KQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQ 696
>07_03_0715 + 20889399-20890111,20890950-20891060,20891128-20891338,
20891414-20891474,20891719-20891956,20892046-20892196,
20892415-20892703,20893464-20894207,20894720-20894851,
20895728-20895965,20896159-20896246,20896422-20896697
Length = 1083
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 116 DITSNPSLNE*FWQRIFSSRSAFKRTTRLLG 24
D T NP +++ RIF S A TTR++G
Sbjct: 931 DSTMNPKISDFGMARIFYSNMAESNTTRIVG 961
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,026,286
Number of Sequences: 37544
Number of extensions: 316514
Number of successful extensions: 820
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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