Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_N09
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098989-2|AAK18954.3| 346|Caenorhabditis elegans Hypothetical ... 30 1.2
Z93389-9|CAB07670.2| 391|Caenorhabditis elegans Hypothetical pr... 29 2.9
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 29 3.8
Z70756-5|CAA94791.2| 290|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z77136-5|CAB00882.1| 1152|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z30973-1|CAA83223.1| 424|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF125963-3|AAD14744.2| 356|Caenorhabditis elegans Serpentine re... 27 8.7
AF045646-10|AAU05566.1| 548|Caenorhabditis elegans Skp1 related... 27 8.7
AF045646-9|AAL32223.1| 660|Caenorhabditis elegans Skp1 related ... 27 8.7
>AF098989-2|AAK18954.3| 346|Caenorhabditis elegans Hypothetical
protein F47G6.3 protein.
Length = 346
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 216 PGVARGTESARRQQRDQETVQFDVG-IILARDKTR-RFRTT 332
PG+ + E R++Q ++E QF+ G + D TR RFR+T
Sbjct: 171 PGINKNVEVNRKKQFEEELKQFETGEFTYSTDPTRYRFRST 211
>Z93389-9|CAB07670.2| 391|Caenorhabditis elegans Hypothetical
protein T13F3.2 protein.
Length = 391
Score = 29.1 bits (62), Expect = 2.9
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Frame = +1
Query: 166 CDEEFVSVLDGYATDICQELLVVLKALG--DNKETKKQYNLTLE-LFWRVIRRADLEQHS 336
C+E+ V + + A DI + +LK L + ++ +K+ N LF V R+ + S
Sbjct: 242 CEEKIVFLSEKIAVDIVKVFRYILKPLNKQEKRKVEKELNPIFHILFDDVARKLQNLKPS 301
Query: 337 MLTLAANLWML----SKKIQDPNN-----KLAVSFAFFIHEHYNRNFYV 456
L + LW L ++K+ + +N + A +H HY + ++
Sbjct: 302 SLEINYMLWQLVWFVAEKVLNEDNLRHGEQYTNQLASDLHNHYKNDLHL 350
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +1
Query: 55 LLELKIRCQNHSFSDGFEVMSPFVYLIAVLSNDKLYGCDEEFVSVLDGYATDICQELLV 231
L +LKI Q+ S + + + P V + ++SND ++ C E VS+ + +E L+
Sbjct: 1593 LSQLKIE-QDVSLNSACKQLFPLVKRLLLVSNDTIHPCAELIVSIFPAMTEEWRKEHLI 1650
>Z70756-5|CAA94791.2| 290|Caenorhabditis elegans Hypothetical
protein T06E4.5 protein.
Length = 290
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 85 HS-FSDGFEVMSPFVYLIAVLSNDKLYGCDEEFVSVLDGYATD-ICQELLVVLKALG 249
HS F DG M+ F+ L A N CD F VLD A + + E + + A+G
Sbjct: 137 HSVFKDG-NSMTDFMKLRAAAYNSSRQKCDNNFFEVLDSQAPNVVVLERMEISMAIG 192
>Z77136-5|CAB00882.1| 1152|Caenorhabditis elegans Hypothetical
protein ZC376.6 protein.
Length = 1152
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 584 MFLCQNKIISNKPFFSCFIPISVLSMVSILIR 489
+F C +I+S+ P F+CF + L+ S ++R
Sbjct: 866 LFRCDRRILSSPPHFNCF--VRALNFFSKMVR 895
>Z30973-1|CAA83223.1| 424|Caenorhabditis elegans Hypothetical
protein B0284.2 protein.
Length = 424
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -3
Query: 124 QKET*LRIH-H*MNDFGNVFLAQEAPSSEQHVCSAVNRLRQ 5
QKET +RI + + + G V +A+ +EQ+ AVN +RQ
Sbjct: 204 QKETLMRIEKNAIENKGKVLIARGDDDNEQNFIDAVNSIRQ 244
>AF125963-3|AAD14744.2| 356|Caenorhabditis elegans Serpentine
receptor, class h protein10 protein.
Length = 356
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 416 AKLTASLLLGS--CIFFESIHKLAAKVSMECCSKSARLITRQNNSNVKLYC 270
A + S+++GS C S+ LA + + CS S R I+ + L+C
Sbjct: 211 ASVFVSIIVGSILCATMGSVSLLALREMVRECSSSLRTISMHRGFLISLFC 261
>AF045646-10|AAU05566.1| 548|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 18, isoform
b protein.
Length = 548
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +1
Query: 205 TDICQELLVVLKALGD--NKETKKQYNLTLELFWRVI 309
T + +E++ L+ L + N+E +++YN +FW++I
Sbjct: 247 TKVVEEMMNELEVLEEYGNREDQEKYNRLATVFWKII 283
>AF045646-9|AAL32223.1| 660|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 18, isoform
a protein.
Length = 660
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +1
Query: 205 TDICQELLVVLKALGD--NKETKKQYNLTLELFWRVI 309
T + +E++ L+ L + N+E +++YN +FW++I
Sbjct: 247 TKVVEEMMNELEVLEEYGNREDQEKYNRLATVFWKII 283
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,725,166
Number of Sequences: 27780
Number of extensions: 310568
Number of successful extensions: 875
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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