Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_N08
(410 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024776-21|AAK68479.1| 65|Caenorhabditis elegans Ribosomal pr... 54 5e-08
Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical pr... 31 0.43
AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical ... 30 0.75
Z81128-1|CAB03398.1| 568|Caenorhabditis elegans Hypothetical pr... 27 7.0
U28929-1|AAN63410.1| 418|Caenorhabditis elegans Hypothetical pr... 27 7.0
AF013953-1|AAC47750.1| 568|Caenorhabditis elegans mom-5 protein. 27 7.0
Z83129-7|CAB05644.1| 256|Caenorhabditis elegans Hypothetical pr... 26 9.2
Z78546-7|CAB01772.1| 375|Caenorhabditis elegans Hypothetical pr... 26 9.2
AL023830-4|CAA19474.1| 375|Caenorhabditis elegans Hypothetical ... 26 9.2
AL021508-1|CAA16431.1| 170|Caenorhabditis elegans Hypothetical ... 26 9.2
>AC024776-21|AAK68479.1| 65|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 28 protein.
Length = 65
Score = 53.6 bits (123), Expect = 5e-08
Identities = 25/33 (75%), Positives = 29/33 (87%), Gaps = 1/33 (3%)
Frame = +3
Query: 135 QCTQVKVEFIGE-TSRQIIRNVKGPVRDGDILT 230
QCTQV+VEFI + +R IIRNVKGPVR+GDILT
Sbjct: 21 QCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53
Score = 31.1 bits (67), Expect = 0.33
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = +2
Query: 71 MDKPNVLARVVKVLGRTGSQG 133
MDK LARV KV+GRTGSQG
Sbjct: 1 MDKLT-LARVTKVIGRTGSQG 20
>Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical
protein T23F1.6 protein.
Length = 330
Score = 30.7 bits (66), Expect = 0.43
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 10 ETRQLWCTCAYCIKLDITSQNG*TQRSCSCRES 108
ETRQ C CA ++ + Q Q SCSC+ S
Sbjct: 22 ETRQASCGCAQSVQPTCSCQQASQQYSCSCQPS 54
>AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical
protein F52C6.3 protein.
Length = 197
Score = 29.9 bits (64), Expect = 0.75
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 172 PAVRSSET*KDPSVTETSSLFLNLNVKLGGCDRLLQHYCIRL 297
P S E +DP E+S + NLNVK+ + L H IR+
Sbjct: 64 PLRESEEVTEDPISVESSEVIGNLNVKVAETQQELHHEGIRI 105
>Z81128-1|CAB03398.1| 568|Caenorhabditis elegans Hypothetical
protein T23D8.1 protein.
Length = 568
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 294 VKAFTCTIYINLCVKLTKP-SKMTILLYSARNKYITXKKK 410
++ F CT+Y +C L KP L SA+N + KK
Sbjct: 86 IRLFLCTVYAPVCTVLEKPIQPCRELCLSAKNGCESLMKK 125
>U28929-1|AAN63410.1| 418|Caenorhabditis elegans Hypothetical
protein F09C12.2 protein.
Length = 418
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +3
Query: 144 QVKVEFIGETSRQIIRNVKGP-VRD 215
Q+ +E++G Q+IR +K P +RD
Sbjct: 267 QLLIEYLGTPDEQVIRRIKSPSIRD 291
>AF013953-1|AAC47750.1| 568|Caenorhabditis elegans mom-5 protein.
Length = 568
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 294 VKAFTCTIYINLCVKLTKP-SKMTILLYSARNKYITXKKK 410
++ F CT+Y +C L KP L SA+N + KK
Sbjct: 86 IRLFLCTVYAPVCTVLEKPIQPCRELCLSAKNGCESLMKK 125
>Z83129-7|CAB05644.1| 256|Caenorhabditis elegans Hypothetical
protein W06G6.12 protein.
Length = 256
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 25 WCTCAYCIKLDITSQNG*TQRSCSCRESA 111
W CAY + ++SQ T +C+CR A
Sbjct: 120 WECCAYWVSKRMSSQEHHTCPNCNCRVKA 148
>Z78546-7|CAB01772.1| 375|Caenorhabditis elegans Hypothetical
protein T21H8.4 protein.
Length = 375
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 223 SSLFLNLNVKLGGCDRLLQ-HYCIRLR 300
++ FLNL +K CD LL+ ++C ++R
Sbjct: 74 TNFFLNLMIKPSPCDLLLKTYFCSKIR 100
>AL023830-4|CAA19474.1| 375|Caenorhabditis elegans Hypothetical
protein T21H8.4 protein.
Length = 375
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 223 SSLFLNLNVKLGGCDRLLQ-HYCIRLR 300
++ FLNL +K CD LL+ ++C ++R
Sbjct: 74 TNFFLNLMIKPSPCDLLLKTYFCSKIR 100
>AL021508-1|CAA16431.1| 170|Caenorhabditis elegans Hypothetical
protein Y70C5B.1 protein.
Length = 170
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 25 WCTCAYCIKLDITSQNG*TQRSCSCRESA 111
W CAY + ++SQ T +C+CR A
Sbjct: 34 WECCAYWVSKRMSSQEHHTCPNCNCRVKA 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,699,893
Number of Sequences: 27780
Number of extensions: 151997
Number of successful extensions: 348
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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