Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_N07
         (388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    90   1e-19
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   2.4  
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    24   7.2  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    24   7.2  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    24   9.6  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    24   9.6  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 89.8 bits (213), Expect = 1e-19
 Identities = 47/107 (43%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
 Frame = +1

Query: 37  MVNVPKQRRTYXXXXXXXXXXXX--SQYKKSKXKARCPGXEDVMIVNSRXYGGQSKPIFX 210
           MVN+PK R+TY              +QYKK        G        S  +GGQ+KP+F 
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQS-GFGGQTKPVFH 59

Query: 211 XXXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 351
                   +VLRLEC  CK ++Q+ LKRCKHFELGG+KK KG  IQF
Sbjct: 60  KKAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 134 AFXLDFLYCDTLCTLWHL 81
           A  L +LY DTL + WHL
Sbjct: 683 AILLHYLYTDTLLSPWHL 700


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 101 LCTLWHLHFLQYVLRCFGTFTIFE 30
           L TL+H   + + + C G F +F+
Sbjct: 75  LLTLFHFPIIGFFVECLGFFNLFK 98


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 185 VVSPNPSSKRRQKPLRKLCSVLS 253
           V SPNP S +R+K  R+  S+ S
Sbjct: 276 VSSPNPPSAKREKKKRRKSSMSS 298


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 150 RRRYDRKQQGLRWSVQTHL 206
           RRR D K  GL W+V + +
Sbjct: 297 RRREDEKYTGLAWNVSSSI 315


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 290 FNATCDLTLQSAHSRRSTIFLVVFAFFL 207
           +N +C LTL     R   +FL+ F++ L
Sbjct: 236 YNVSCILTLPIYQRRGYGVFLIDFSYLL 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,460,691
Number of Sequences: 5004
Number of extensions: 24562
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)