Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_N07
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...    92   1e-19
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...    92   1e-19
AC084197-30|AAK68595.1|  303|Caenorhabditis elegans Exosome (mul...    31   0.21 
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    28   2.6  
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    27   6.1  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    27   6.1  
L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z68882-14|CAA93109.1|  366|Caenorhabditis elegans Hypothetical p...    26   8.1  

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score = 92.3 bits (219), Expect = 1e-19
 Identities = 49/106 (46%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
 Frame = +1

Query: 37  MVNVPKQRRTYXXXXXXXXXXXX-SQYKKSKXKARCPGXEDVMIVNSRXYGGQSKPIFXX 213
           MVNVPK RRT+             +QYKK K      G        S  +GGQ+KPIF  
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQS-GFGGQTKPIFRK 59

Query: 214 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 351
                  IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 60  KAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score = 92.3 bits (219), Expect = 1e-19
 Identities = 49/106 (46%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
 Frame = +1

Query: 37  MVNVPKQRRTYXXXXXXXXXXXX-SQYKKSKXKARCPGXEDVMIVNSRXYGGQSKPIFXX 213
           MVNVPK RRT+             +QYKK K      G        S  +GGQ+KPIF  
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQS-GFGGQTKPIFRK 59

Query: 214 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 351
                  IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 60  KAKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105


>AC084197-30|AAK68595.1|  303|Caenorhabditis elegans Exosome
           (multiexonuclease complex)component protein 2 protein.
          Length = 303

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 111 VQKVQGKGTLPRXRR--RYDRKQQGLRWSVQTHLQKEGKNH 227
           VQ+VQ  GTL    R  +Y + QQG+   V  HL K+ K H
Sbjct: 151 VQQVQHDGTLMLHTRNNKYGKLQQGILIKVPPHLIKKSKKH 191


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 21   PNELKNGERTKTAQDVLQKM*MPQSTQGITVQKVQGKGTL 140
            P+ L+NG R     D + +     STQG   Q   G+G++
Sbjct: 1071 PHSLQNGPRNTYGMDQMTQQMSHMSTQGSMAQGSMGQGSM 1110


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
           protein F52C9.1a protein.
          Length = 1336

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 125 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 30
           ++ + C+T   L    FL +V  C+GT T  +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
           protein F52C9.1b protein.
          Length = 1331

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 125 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 30
           ++ + C+T   L    FL +V  C+GT T  +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767


>L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical
           protein F44E2.3 protein.
          Length = 244

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 241 LRLECADCKVRSQVALKRCKHFELGGDKK 327
           + +E A+CK R + + K+CK  E   ++K
Sbjct: 152 MAVELAECKKRDEESRKKCKQLEAELERK 180


>Z68882-14|CAA93109.1|  366|Caenorhabditis elegans Hypothetical
           protein C47E12.11 protein.
          Length = 366

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +2

Query: 50  QNSAGRTAKNVNATKYTRYHSTKSPRXRHAAQ 145
           + SAG TAK+ N TK  +   TKS R  H A+
Sbjct: 66  RQSAGSTAKSKNKTKSEKSKKTKS-RGVHVAK 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,416,770
Number of Sequences: 27780
Number of extensions: 149911
Number of successful extensions: 473
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)