Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_N03
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc... 197 1e-51
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch... 196 2e-51
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 1.8
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 27 2.4
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 3.2
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.2
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 4.2
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 9.7
>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 197 bits (481), Expect = 1e-51
Identities = 91/161 (56%), Positives = 115/161 (71%)
Frame = +1
Query: 70 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 249
M RYS P K KARG+ LR HFKN+ E A I M L++A +L NV E K+ +PF
Sbjct: 1 MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPF 60
Query: 250 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVN 429
RRFNGGVGR AQ K+FG TQ RWP KS +F LL+NAE+NA+ K LD+D+L+I H+QVN
Sbjct: 61 RRFNGGVGRTAQGKEFGVTQARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVN 120
Query: 430 RAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARGS 552
AP RRRTYRAHGR+ Y+SSP HIE+ ++E E+AV + +
Sbjct: 121 AAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEEEEAVPKAN 161
>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 187
Score = 196 bits (478), Expect = 2e-51
Identities = 91/161 (56%), Positives = 114/161 (70%)
Frame = +1
Query: 70 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 249
M RYS P K KARG+ LR HFKN+ E A I M L++A +L NV E K+ +PF
Sbjct: 1 MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPF 60
Query: 250 RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVN 429
RRFNGGVGR AQ K+FG TQ RWP KS F LL+NAE+NA+ K LD+D+L+I H+QVN
Sbjct: 61 RRFNGGVGRTAQGKEFGVTQARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVN 120
Query: 430 RAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARGS 552
AP RRRTYRAHGR+ Y+SSP HIE+ ++E E+AV + +
Sbjct: 121 AAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEEEEAVPKAN 161
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 130 NLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEK-KECI 243
NLRV K T ++ +++ P + RYLK ++E K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +3
Query: 420 SGKSRALPTQTYIPCSRS---HQPLHVVSLPHRSMS 518
S K RA +T + ++S HQ +H +S PH S S
Sbjct: 340 SDKERANLNKTMVSINKSINIHQSIHEISCPHHSSS 375
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 307 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 224
++C TA+L+H D RR G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 27 IIPFLVIF-SLERNNNGSLLSGAG*PCEILQSAW 125
++PF+ +F + R+ NGS LSG I S W
Sbjct: 458 LVPFMTVFLKILRDENGSPLSGKESTKVIFSSMW 491
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 110 PAKRVVQTSVFTLRTHMRPQWQSGRCRSVVL 202
P K V+ R + W+ GRCR VVL
Sbjct: 239 PFKTRPWKEVYAERCRVECNWRHGRCRQVVL 269
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 127 SNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKK 234
+N ++ K+ ETA A+RKM + +R L+ + ++K
Sbjct: 73 TNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQK 108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,468
Number of Sequences: 5004
Number of extensions: 54044
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -