Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_N03
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   244   3e-65
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   136   1e-32
AL132948-36|CAD57707.2|  186|Caenorhabditis elegans Hypothetical...    31   0.96 
AF324054-1|AAK01415.1|  162|Caenorhabditis elegans Ly-6-related ...    30   1.3  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    28   5.1  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  244 bits (598), Expect = 3e-65
 Identities = 113/156 (72%), Positives = 131/156 (83%)
 Frame = +1

Query: 79  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 258
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 259 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 438
           +GG+GR AQ KQ+ TTQGRWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA 
Sbjct: 66  HGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 125

Query: 439 CLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVAR 546
            LRRRTYRAHGRINPYMSSPCHIEV L+E+ED V++
Sbjct: 126 KLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVSK 161


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  136 bits (329), Expect = 1e-32
 Identities = 81/156 (51%), Positives = 96/156 (61%)
 Frame = +1

Query: 79  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 258
           YSR P+N  KSCKARGS+LRVHFKNT+E A     M LR               +P RR 
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAA-----MALRG--------------MPLRRA 46

Query: 259 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 438
              +    + K+    +           L LL+NAESNA+ K LDVD LVI+HI V RA 
Sbjct: 47  QAFLNHVKEHKEIVPFRR---------FLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 97

Query: 439 CLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVAR 546
            LRRRTYRAHGRINPYMSSPCHIEV L+E+ED V++
Sbjct: 98  KLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVSK 133


>AL132948-36|CAD57707.2|  186|Caenorhabditis elegans Hypothetical
           protein Y39B6A.48 protein.
          Length = 186

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
 Frame = -3

Query: 342 EEFGGFLGPATLCCAKLLCLSTATNAAVEATEW-NTLFLFNHVF--EVTNSTTERHLPDC 172
           E FG   G       ++ C S  + +   + ++  T +++  VF     +  +ER +P  
Sbjct: 30  ESFGRSSGAGAPIPRQVECYSCMSLSYQTSWKYLQTTYIYPKVFTDRCRDPNSERGMPTV 89

Query: 171 HCGLICVLKVNTEV*TTRFAGFRRVIR-LPRVTTH 70
            CG +CV  +  +V    F GF+ +   L RV  H
Sbjct: 90  MCGSVCVSLMEPDVEAGVFIGFKHIRGCLDRVLRH 124


>AF324054-1|AAK01415.1|  162|Caenorhabditis elegans Ly-6-related
           protein HOT-2 protein.
          Length = 162

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
 Frame = -3

Query: 252 TEWN---TLFLFNHVF--EVTNSTTERHLPDCHCGLICVLKVNTEV*TTRFAGFRRVIR- 91
           T W    T +++  VF     +  +ER +P   CG +CV  +  +V    F GF+ +   
Sbjct: 21  TSWKYLQTTYIYPKVFTDRCRDPNSERGMPTVMCGSVCVSLMEPDVEAGVFIGFKHIRGC 80

Query: 90  LPRVTTH 70
           L RV  H
Sbjct: 81  LDRVLRH 87


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = +1

Query: 316 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 477
           W K+    +  LL  AE++    + D+D++V   I   +  P L R       +R +G  
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547

Query: 478 NPYMSSPCHIEVCLSER 528
           NP+  SPC ++   S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -2

Query: 505 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACQRPKFCC 377
           CG +T  R  C  +    +C G   +L  C   +     K CC
Sbjct: 40  CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,865,822
Number of Sequences: 27780
Number of extensions: 323333
Number of successful extensions: 817
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)