Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_N01
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   186   2e-48
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   2.0  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   2.7  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   2.7  
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy...    26   3.6  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   6.2  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   8.3  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  186 bits (453), Expect = 2e-48
 Identities = 92/185 (49%), Positives = 128/185 (69%), Gaps = 2/185 (1%)
 Frame = +1

Query: 40  KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 213
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 214 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 393
            P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123

Query: 394 YDAILXDLVFPAEIVGKRIRVKLDGSQLIKVHLXXNXQTTIEHKVDTFQSVYKKLTGREX 573
           ++AIL D+VFP EI+GKR R   DG + IKV L      T+++K+ +F SVY KLTG+  
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNV 183

Query: 574 DLRVP 588
               P
Sbjct: 184 TFEFP 188


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -1

Query: 332 LGLGRILRSPTKTTCLPLNFFSSSRTS 252
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +1

Query: 202 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 294
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +1

Query: 376 RTLTSVYDAILXDLVFPAEIVGKRIRVKLDGSQLIKVHLXXNXQTTIEHKVDTF-QSVYK 552
           ++L + YD +  DL   ++ +GK+  ++   ++L  VHL  +   TIE  +  F Q+V  
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLF 621

Query: 553 KLTGREXDLRVP 588
           + T      ++P
Sbjct: 622 QSTKSTASFQLP 633


>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 25  STMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELH 183
           ST++ K++ AS  E   F   + Q  + +  +   KA+   L     KE+ LH
Sbjct: 124 STLTAKLLVASFGETIPFSLPLGQLSINVPPSLYHKAEFSPLDELSPKEVILH 176


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
 Frame = +1

Query: 7    SLPXKLSTMSTKIIKASGAEADSFETSISQALVELETNS-DLKA-QLRELYITKAKEIEL 180
            S+P   ST STK+   S  + D+ + S+S  L      S D K  QL +         E 
Sbjct: 862  SIPDNASTASTKVSNDSHLKPDADKKSVSSELTHASKPSLDEKTMQLAKQIAVSFHGYEA 921

Query: 181  HNKKSIIIYVPMPKLKAFQKIQIRLVRELEK 273
              ++++ +    PK+  +  ++  + +++ K
Sbjct: 922  PTRENLDVNDDRPKISLWGILKGMIGKDMTK 952


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 378 P*AWPLLFVSNTSFVAGLRQDLTVSN 301
           P A  +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,848
Number of Sequences: 5004
Number of extensions: 40509
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)