Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_M23
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    57   5e-10
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    24   4.4  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    24   4.4  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    24   4.4  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    24   5.8  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    23   7.7  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    23   7.7  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 57.2 bits (132), Expect = 5e-10
 Identities = 27/53 (50%), Positives = 34/53 (64%)
 Frame = +1

Query: 49  MAKSKNHTNHNQNRKAHRNGIKKPR*DQARIHPWHGSKIFKESKVLQEG*PEA 207
           MAKSKNHTNHNQN+KAHRNGIK+P+  +     +  +K  +  K    G  EA
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEA 53


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
          TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 57 LCHFDEFSIHFESED 13
          +CHF+E SI  ES++
Sbjct: 1  MCHFNELSIEIESKN 15


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 5    LVLSSDSKWIENSSKWQSQRIIQ 73
            L+  + S+W   S +W+S R IQ
Sbjct: 1462 LIFCTPSQWDSLSKRWRSMRSIQ 1484


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 35  ENSSKWQSQRIIQIITKTAKLTEMVSKSQ-GKTRHESTLGMDPKFLRNQR 181
           EN++KW ++ I  +++  +K+      ++  K + E    + P F+ N R
Sbjct: 401 ENTTKWLNKAINDLVSSLSKINFSTEGTEFDKKQIEMIQNLPPLFVFNAR 450


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 11  LSSDSKWIENSSKWQSQRIIQIITKTAKLTEMVSKSQGKT 130
           L S +   ENS+K +     Q+   T   TEMVS +  K+
Sbjct: 135 LESRNNRDENSAKREKNNSHQVEADTNNATEMVSSNAKKS 174


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 22  FKVD*KLIKMAKSKNHTNHNQNRKAHRNGIKKPR 123
           +K+D  +  +AK  +  NHN ++ A +  I +PR
Sbjct: 333 YKLD--ICGLAKRDDRKNHNHSKPATQANILQPR 364


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -2

Query: 239 FSQPPSRVAWLASGY 195
           FSQPP R A   SGY
Sbjct: 138 FSQPPFRFALFFSGY 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,169,775
Number of Sequences: 5004
Number of extensions: 20053
Number of successful extensions: 52
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)