Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_M23
(306 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0661 - 16726958-16726966,16727133-16727234 49 6e-07
01_02_0115 - 11248021-11248101,11249017-11249118 49 6e-07
08_01_0349 - 3082700-3083407 29 0.95
06_03_0336 + 19671500-19672150,19672681-19673301 27 2.2
08_01_0350 - 3087631-3088461 27 2.9
08_02_0588 + 19036509-19039235 27 3.8
02_02_0517 - 11125596-11126234,11126271-11126432 26 6.7
11_05_0033 + 18500092-18501372,18502419-18502826,18502948-185029... 25 8.9
08_01_0317 - 2807275-2807487,2807573-2807737,2807818-2807987,280... 25 8.9
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210... 25 8.9
>05_03_0661 - 16726958-16726966,16727133-16727234
Length = 36
Score = 49.2 bits (112), Expect = 6e-07
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPR 123
MAKSKNHT HNQ+ KAH+NGIKKP+
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPK 25
>01_02_0115 - 11248021-11248101,11249017-11249118
Length = 60
Score = 49.2 bits (112), Expect = 6e-07
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPR 123
MAKSKNHT HNQ+ KAH+NGIKKP+
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPK 25
Score = 39.9 bits (89), Expect = 4e-04
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +2
Query: 113 KSQGKTRHESTLGMDPKFLRNQRFCKKGNLK 205
K + R ST GMDPKFLRNQR+ +K N K
Sbjct: 22 KKPKRHRQTSTKGMDPKFLRNQRYSRKHNKK 52
>08_01_0349 - 3082700-3083407
Length = 235
Score = 28.7 bits (61), Expect = 0.95
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 138 SCLVLPWLFDTISVSFAVLVMICMIL*LCHFDEFSIHFESED 13
SC V WLF I + A L M+C + L + E+ + ED
Sbjct: 180 SCPVFLWLFGPIPMFAACLAMVCALYFLDVYTEWDKADDEED 221
>06_03_0336 + 19671500-19672150,19672681-19673301
Length = 423
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 148 WHGSKIFKESKVLQEG*PEASQATREGG 231
WH FK S+ G PEA+ A EGG
Sbjct: 223 WHEINQFKSSEKSLVGMPEAAAAEEEGG 250
>08_01_0350 - 3087631-3088461
Length = 276
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 138 SCLVLPWLFDTISVSFAVLVMICMIL*LCHFDEFSIHFESED 13
SC V WLF I + + L M+C + L + E+ E E+
Sbjct: 200 SCPVFLWLFGPIPMFASCLAMVCALYFLDVYTEWDEKPEEEE 241
>08_02_0588 + 19036509-19039235
Length = 908
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 220 ELLGWLQVTLLAKPLIP*KFWIHAKGGFVPG 128
ELLGW QV A ++P + + A F PG
Sbjct: 423 ELLGWKQVLAQAANVLPKRRMVSATRRFPPG 453
>02_02_0517 - 11125596-11126234,11126271-11126432
Length = 266
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -1
Query: 138 SCLVLPWLFDTISVSFAVLVMICMIL*LCHFDEFSIHFESED 13
SC V WLF I + A M+C + L D++ + D
Sbjct: 209 SCPVFLWLFGPIPMFAACAAMVCALYFLDVCDDWEEEHQDHD 250
>11_05_0033 +
18500092-18501372,18502419-18502826,18502948-18502990,
18503236-18503282,18504582-18505901
Length = 1032
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 162 FGSMPRVDSCLVLPWLFDTISVSFAVLVMI 73
F +P S VLPW+F + V F + ++
Sbjct: 721 FTHLPSESSTRVLPWVFSFLVVLFPITYLL 750
>08_01_0317 -
2807275-2807487,2807573-2807737,2807818-2807987,
2808256-2808724,2810581-2810727,2810968-2810976,
2811054-2811890
Length = 669
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 209 LASGYPSCKTFDSLKILDPCQGWIRAWSY-LGFLI 108
L +P CKTF +LK L + ++R Y L FL+
Sbjct: 550 LIRSFPRCKTFSNLKYLKLGEWFLRDGCYPLLFLL 584
>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
20921184-20921263,20922759-20922875,20923089-20923136,
20923509-20923601,20923881-20923958,20924114-20924218,
20924543-20925212,20925253-20925350,20925887-20925963,
20926035-20926117,20926208-20926287,20927060-20927139,
20927698-20927743,20928709-20929181,20929234-20929579
Length = 2139
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 6/25 (24%)
Frame = -2
Query: 194 PSCKT------FDSLKILDPCQGWI 138
P+C+T F+S+K+L PC+ W+
Sbjct: 1448 PNCRTEKLYSYFESIKLLFPCEQWM 1472
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,430,361
Number of Sequences: 37544
Number of extensions: 129370
Number of successful extensions: 394
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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