Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_M23
(306 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49148-1|CAA89008.1| 159|Homo sapiens ribosomal protein L29 pro... 52 2e-07
U49083-1|AAC50647.1| 159|Homo sapiens HIP protein. 52 2e-07
U10248-1|AAC50499.1| 159|Homo sapiens ribosomal protein L29 pro... 52 2e-07
BC071909-1|AAH71909.1| 161|Homo sapiens ribosomal protein L29 p... 52 2e-07
BC071663-1|AAH71663.1| 159|Homo sapiens ribosomal protein L29 p... 52 2e-07
BC070481-1|AAH70481.1| 159|Homo sapiens ribosomal protein L29 p... 52 2e-07
BC070190-1|AAH70190.1| 159|Homo sapiens ribosomal protein L29 p... 52 2e-07
BC008926-1|AAH08926.1| 159|Homo sapiens ribosomal protein L29 p... 52 2e-07
AL450405-1|CAI16223.1| 172|Homo sapiens protein ( Human DNA seq... 52 2e-07
>Z49148-1|CAA89008.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPR 123
MAKSKNHT HNQ+RK HRNGIKKPR
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPR 25
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +2
Query: 113 KSQGKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 220
K R+ES G+DPKFLRN RF KK N K K++
Sbjct: 22 KKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>U49083-1|AAC50647.1| 159|Homo sapiens HIP protein.
Length = 159
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPR 123
MAKSKNHT HNQ+RK HRNGIKKPR
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPR 25
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +2
Query: 113 KSQGKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 220
K R+ES G+DPKFLRN RF KK N K K++
Sbjct: 22 KKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>U10248-1|AAC50499.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPR 123
MAKSKNHT HNQ+RK HRNGIKKPR
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPR 25
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +2
Query: 113 KSQGKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 220
K R+ES G+DPKFLRN RF KK N K K++
Sbjct: 22 KKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC071909-1|AAH71909.1| 161|Homo sapiens ribosomal protein L29
protein.
Length = 161
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPR 123
MAKSKNHT HNQ+RK HRNGIKKPR
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPR 25
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +2
Query: 113 KSQGKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 220
K R+ES G+DPKFLRN RF KK N K K++
Sbjct: 22 KKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC071663-1|AAH71663.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPR 123
MAKSKNHT HNQ+RK HRNGIKKPR
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPR 25
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +2
Query: 113 KSQGKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 220
K R+ES G+DPKFLRN RF KK N K K++
Sbjct: 22 KKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC070481-1|AAH70481.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPR 123
MAKSKNHT HNQ+RK HRNGIKKPR
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPR 25
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +2
Query: 113 KSQGKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 220
K R+ES G+DPKFLRN RF KK N K K++
Sbjct: 22 KKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC070190-1|AAH70190.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPR 123
MAKSKNHT HNQ+RK HRNGIKKPR
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPR 25
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +2
Query: 113 KSQGKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 220
K R+ES G+DPKFLRN RF KK N K K++
Sbjct: 22 KKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>BC008926-1|AAH08926.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPR 123
MAKSKNHT HNQ+RK HRNGIKKPR
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPR 25
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +2
Query: 113 KSQGKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 220
K R+ES G+DPKFLRN RF KK N K K++
Sbjct: 22 KKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 57
>AL450405-1|CAI16223.1| 172|Homo sapiens protein ( Human DNA
sequence from clone RP11-632C17 on chromosome 6 Contains
the gene for a novel protein similar to ribosomal
protein L29 ).
Length = 172
Score = 52.4 bits (120), Expect = 2e-07
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPR 123
MAKSKNHT HNQ+RK HRNGIKKPR
Sbjct: 16 MAKSKNHTTHNQSRKWHRNGIKKPR 40
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/36 (52%), Positives = 23/36 (63%)
Frame = +2
Query: 113 KSQGKTRHESTLGMDPKFLRNQRFCKKGNLKPAKQL 220
K R+ES G+DPKFLRN RF KK N K K++
Sbjct: 37 KKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKM 72
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,531,473
Number of Sequences: 237096
Number of extensions: 770732
Number of successful extensions: 1428
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1428
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1342408202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -