Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_M22
(560 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc... 118 4e-28
SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce... 44 2e-05
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 38 0.001
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 35 0.007
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 31 0.15
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 30 0.27
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 29 0.35
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac... 29 0.47
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1... 29 0.62
SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces pom... 26 3.3
SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.3
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 26 3.3
SPAC977.05c |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.3
>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 118 bits (285), Expect = 4e-28
Identities = 57/86 (66%), Positives = 68/86 (79%)
Frame = +1
Query: 79 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 258
MKLVRFLMKL++ETV+IELKNG++VHGTIT VD+ MNTHLKAVK+T+K RE + +ETLSI
Sbjct: 1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSI 60
Query: 259 RGNNIRYYXXXXXXXXXXXXIDDTPK 336
RGNNIRYY IDD+ K
Sbjct: 61 RGNNIRYYILPDSLPLDTLLIDDSTK 86
>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 97
Score = 43.6 bits (98), Expect = 2e-05
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Frame = +1
Query: 100 MKLSHET----VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 267
+KL HET VT+EL+NGS G + + MN ++ + VT ++ L+ + IRG+
Sbjct: 5 IKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVYIRGS 64
Query: 268 NIRY 279
+IR+
Sbjct: 65 HIRF 68
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 121 VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREE-LQLETLSIRGNNIRY 279
+ +ELKNG +G + D MN L+ V T+ + ++ +L IRGNNI+Y
Sbjct: 15 ILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKY 68
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 35.1 bits (77), Expect = 0.007
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +1
Query: 79 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKV--TLKNREELQLETL 252
M F L VT+ELKN + G + VD +N L+ + V K ++ L
Sbjct: 1 MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDL 60
Query: 253 SIRGNNIRY 279
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 30.7 bits (66), Expect = 0.15
Identities = 15/59 (25%), Positives = 32/59 (54%)
Frame = +1
Query: 97 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNI 273
L K V ++L V+G + G D+ +N L+ + E++++ +++IRGN++
Sbjct: 9 LKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSVAIRGNSV 67
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 29.9 bits (64), Expect = 0.27
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 100 MKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLK 222
++LSHE EL+ SV+ + VD+ N+H +++ V L+
Sbjct: 208 IRLSHEAHVAELETISVILYQLAKVDLFQNSHFESLLVMLR 248
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 29.5 bits (63), Expect = 0.35
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +1
Query: 94 FLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNI 273
FL K+ + V I L +G G ++ +D MN L+ + + ++ IRGNN+
Sbjct: 8 FLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNV 67
Query: 274 RY 279
Y
Sbjct: 68 LY 69
>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
Smf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 78
Score = 29.1 bits (62), Expect = 0.47
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +1
Query: 94 FLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNI 273
FL L + V + LK G GT+ VD MN L + + + L + IR NN+
Sbjct: 11 FLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEILIRCNNV 70
>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 28.7 bits (61), Expect = 0.62
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 239 CSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVTVSWLSFIKNL 90
C+ FF F F VF+A +PV+ TT F S V VS ++ I +
Sbjct: 426 CAVILFFMGLFAKFAAVFVAIPSPVLGGMTT--FLFSSVAVSGIAIISQI 473
>SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = -1
Query: 269 LFPRILKVSNCSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVT 120
L PR+ ++ ++ F +TFT ++ T P + +PF N++ +
Sbjct: 78 LIPRLFTIAENDTANFTPLTFT----TYLKTCNPQSIENAMIPFVNTVTS 123
>SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = -1
Query: 269 LFPRILKVSNCSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVT 120
L PR+ ++ ++ F +TFT ++ T P + +PF N++ +
Sbjct: 78 LIPRLFTIAENDTANFTPLTFT----TYLKTCNPQSIENAMIPFVNTVTS 123
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 3.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 484 VWLKIRFLSTGVRDLGLHDRLWGLRGHLGLCHDHLWRRRRAQ 359
+W K R T GL+ RL G +GL + + RRRR +
Sbjct: 429 LWRKDRHGQTVCNACGLYARLHGHNRPIGLKKNKITRRRRGK 470
>SPAC977.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 204
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = -1
Query: 269 LFPRILKVSNCSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVT 120
L PR+ ++ ++ F +TFT ++ T P + +PF N++ +
Sbjct: 79 LIPRLFTIAENDTANFTPLTFT----TYLKTCNPQSIENAMIPFVNTVTS 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,751,332
Number of Sequences: 5004
Number of extensions: 29356
Number of successful extensions: 71
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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