Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_M18
(544 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 196 1e-51
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 2.4
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 26 4.1
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 25 7.2
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 25 7.2
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 25 7.2
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 9.5
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 9.5
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 25 9.5
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 25 9.5
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 196 bits (479), Expect = 1e-51
Identities = 97/125 (77%), Positives = 105/125 (84%)
Frame = +3
Query: 33 AVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 212
A ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLG
Sbjct: 3 AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62
Query: 213 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 392
EKGRRIRELT++VQKRF E +VELYAEKV RGLCA+AQ ESLRYKL+ GLAVRRA Y
Sbjct: 63 EKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAY 122
Query: 393 GVLRF 407
GVLR+
Sbjct: 123 GVLRY 127
Score = 64.5 bits (150), Expect = 1e-11
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = +1
Query: 406 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHS 513
++ME+GA+GCEVV+SGKLR RAKSMKF DG MIHS
Sbjct: 127 YVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHS 162
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 2.4
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 183 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAI-AQAESLRYKL 359
MATR Q RR E + +QK +N + ++EL E+V G + + + RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783
Query: 360 IG 365
+G
Sbjct: 784 LG 785
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 459 QLA-RYNNFTTTGTRFHDENGEHHSKHDVQRD 367
QLA +Y+NF + T ++ NGEH S+ + D
Sbjct: 178 QLACKYSNFKSLMTSYNKVNGEHVSQSRILLD 209
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 301 FSAYNSTDCSGMLNRFCTTEVSSR 230
+ +Y S+DC G+L+R T+ R
Sbjct: 360 YPSYLSSDCKGLLSRMLVTDPLKR 383
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 287 FYRLLWNVESLLYYGSQL 234
FYRL W + +LY SQ+
Sbjct: 643 FYRLCWKDKGILYQDSQI 660
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -1
Query: 361 ISLYLRDSAWAIAQRPRVATFSAYNSTDCSGMLNRFCTTEVSSRILRPFSPST 203
+ L L+ A+ ++ S+ +N F T SSR L PFS +T
Sbjct: 101 VRLPLKSDIEAVKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDAT 153
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 329 DSAKTTSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHTL 198
+ KT S+LF + LL ES + L+D +S S H L
Sbjct: 17 EKLKTMWSYLFKLFGITLLERTESWYTVKTHLSDDSSSSSSHRL 60
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = -3
Query: 185 HNND--LRADGSDPH--FHAGVAVLGQLPSEELIEFRLENPISNKFS 57
HNN L +D P+ F G L PS+ + F ENP+ K S
Sbjct: 287 HNNSIYLMSDNLVPNLDFMQGAKRLASCPSDIISSFTYENPLLPKQS 333
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 24.6 bits (51), Expect = 9.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +1
Query: 148 CGSLPSARRSLLWP 189
C +LPS + +L+WP
Sbjct: 87 CSTLPSVKSTLIWP 100
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 458 SLPDTTTSQPRAPDSMMKTENTIASTTYSETS 363
+LPDTT+S P +S NT+ S + + +
Sbjct: 735 TLPDTTSSVPTQHNSFDAMHNTLRSPSLNSNN 766
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,500
Number of Sequences: 5004
Number of extensions: 45041
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -