Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_M18
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 219 2e-57
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171... 31 0.45
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 29 1.8
08_01_0346 - 3063440-3064189 28 4.2
05_05_0311 - 24004380-24004440,24004685-24004756,24004875-240049... 28 5.5
03_01_0170 + 1389759-1391159 28 5.5
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054... 27 9.7
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 219 bits (534), Expect = 2e-57
Identities = 108/121 (89%), Positives = 112/121 (92%)
Frame = +3
Query: 45 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 224
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 7 ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66
Query: 225 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 404
RIRELTSVVQKRFN PE VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 67 RIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 126
Query: 405 F 407
F
Sbjct: 127 F 127
Score = 64.5 bits (150), Expect = 5e-11
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = +1
Query: 406 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHS 513
F+MESGA+GCEV+VSGKLR QRAKSMKF DG MI S
Sbjct: 127 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISS 162
>05_03_0682 -
16916437-16916686,16916761-16916822,16917082-16917147,
16917606-16917737,16917925-16918026,16918146-16918343,
16918409-16918555,16918804-16918914,16919661-16920194,
16920269-16920425,16920511-16920660,16920744-16920883,
16921668-16921784,16922759-16922932,16923020-16923187,
16923323-16923464,16923610-16923728,16924997-16925098,
16925618-16925701,16926843-16927142
Length = 1084
Score = 31.5 bits (68), Expect = 0.45
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +2
Query: 335 GRISKIQAYRRSRCTSCLLWCSPFSSWNLVPVVVKLLYLA 454
G + KIQ + C SC L+ SSW V VV+K +LA
Sbjct: 277 GHLPKIQKDHKENCCSCGLFSCCKSSWQKVWVVLKPGFLA 316
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 302 GGYSWSLRYRPG-RISKIQAYRRSRCTSCLLWC 397
G SWS RY+ ISK Y RC C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697
>08_01_0346 - 3063440-3064189
Length = 249
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 336 AESLRYKLIGGLAVRRACYGVLRFHHGIW 422
A S L+GG A ACYGVLR ++
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLRLFANLY 249
>05_05_0311 -
24004380-24004440,24004685-24004756,24004875-24004946,
24005155-24005298,24005535-24005606,24006057-24006286
Length = 216
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -3
Query: 176 DLRADGSDPHFHAGVAVLGQLPSEELIEFRLENPISNKFSLL*NIVHGHDCN 21
DL H A +A L QL E+ +E PI +F L N++ CN
Sbjct: 78 DLEEMNLSGHLSADLARLDQLQFMEIASNNIEGPIPPEFGNLENLISLDLCN 129
>03_01_0170 + 1389759-1391159
Length = 466
Score = 27.9 bits (59), Expect = 5.5
Identities = 24/92 (26%), Positives = 34/92 (36%)
Frame = +3
Query: 135 SGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 314
S R P + ++ +VL + GRR + R P ++ A A +
Sbjct: 16 SASAARFAPADNHLLACGATAPAVLPD-GRRFVPDSGCASTRLRSPAPTLPSAASSAAPQ 74
Query: 315 GLCAIAQAESLRYKLIGGLAVRRACYGVLRFH 410
A A + LAVRR Y VLR H
Sbjct: 75 PTPLHAAARVFSCRASYDLAVRRRGYHVLRLH 106
>01_03_0285 -
14604499-14604608,14604692-14605203,14605339-14605418,
14605597-14605699,14605759-14605907,14606088-14606180,
14606289-14606675,14607690-14608124,14608198-14608311,
14608405-14608453,14608684-14608843,14608941-14609499
Length = 916
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/41 (24%), Positives = 24/41 (58%)
Frame = +3
Query: 99 EFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKG 221
+F+T ++ DG++ VE R ++ + +++ +R +G G
Sbjct: 150 QFVTAKVGNDGWAAVEKRFNQLQVDGVLLRSRFGKCIGMDG 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,635,334
Number of Sequences: 37544
Number of extensions: 319159
Number of successful extensions: 891
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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