Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_M12
(554 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S... 181 7e-47
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac... 180 1e-46
SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit S19... 52 6e-08
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 28 1.1
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 27 1.9
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 27 2.5
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 26 3.2
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 26 4.3
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 26 4.3
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 5.7
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 25 9.9
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 25 9.9
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 25 9.9
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 25 9.9
>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 154
Score = 181 bits (440), Expect = 7e-47
Identities = 89/142 (62%), Positives = 103/142 (72%), Gaps = 1/142 (0%)
Frame = +3
Query: 57 LKKKAYFQEVHLPG*LISISSLY-MPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRA 233
L+KK F+ G + + L + EQL++L H GL ++KLR+A
Sbjct: 15 LRKKRTFRTFAYRG--VELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKA 72
Query: 234 KKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTY 413
K EAP NEKP VKTHLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TY
Sbjct: 73 KSEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITY 132
Query: 414 KPVKHGRPGIGATHSSRFIPLK 479
KP KHGRPGIGATHSSRFIPLK
Sbjct: 133 KPTKHGRPGIGATHSSRFIPLK 154
>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
S15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 153
Score = 180 bits (439), Expect = 1e-46
Identities = 89/142 (62%), Positives = 103/142 (72%), Gaps = 1/142 (0%)
Frame = +3
Query: 57 LKKKAYFQEVHLPG*LISISSLY-MPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRA 233
L+KK F+ G + + L + EQL++L H GL ++KLR+A
Sbjct: 14 LRKKRSFRTFAYRG--VELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKA 71
Query: 234 KKEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTY 413
K EAP NEKP VKTHLRNMII+PEMVGS+VGIYNGK FNQVEI+PEMIGHYLGEFS+TY
Sbjct: 72 KTEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITY 131
Query: 414 KPVKHGRPGIGATHSSRFIPLK 479
KP KHGRPGIGATHSSRFIPLK
Sbjct: 132 KPTKHGRPGIGATHSSRFIPLK 153
>SPAC1751.02c |rsm19||mitochondrial ribosomal protein subunit
S19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 52.0 bits (119), Expect = 6e-08
Identities = 23/49 (46%), Positives = 35/49 (71%)
Frame = +3
Query: 270 VKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYK 416
+KT +R+ I+P MVG+ ++NGK++ V+I +MIGH LGEF+ T K
Sbjct: 50 IKTAVRSATILPRMVGAQFMVHNGKSYANVKITEDMIGHKLGEFAPTRK 98
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 237 KEAPPNEKPEIVKTHLRNMIIVPEMVGSIVGIYN 338
K A P++KP + THL +++I VG + ++
Sbjct: 60 KRARPSQKPPLRSTHLPHLLIFALFVGKHIACFH 93
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 332 NADN*TDHLGNDDHVSQVSLHDLWLLIR 249
N N T H+ ++ V +V++HD+W I+
Sbjct: 18 NVPNETKHIFDEISVKEVAVHDIWKRIQ 45
>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 472 GMNLELCVAPIPGLPCFTGLYVTENS 395
G+N+ LCV PG P TG ++ENS
Sbjct: 241 GINVRLCVVINPGNP--TGACISENS 264
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 3.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 463 LELCVAPIPGLPCFTGLYVTE 401
LELC PG+P G++ E
Sbjct: 222 LELCTRMFPGIPIMAGIFADE 242
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 4.3
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Frame = +3
Query: 306 EMVGSIVGIYNGK-TFNQVEIKPEMI-----GHYLGEFSV-TYKPVKHGRPGIGATH 455
E+ + VG+YNGK F + + P+ + H L E ++ KP++ PG+ TH
Sbjct: 23 EITDATVGVYNGKIVFLEKSMTPKTLEEAKSHHLLKEATIHKLKPLQFMFPGLIDTH 79
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 25 KQETWLRSTKPSRKKRIFRKFTYRGS*SRSAP 120
K+ T+ + KP RK RI+ F G S + P
Sbjct: 7 KRRTYENAVKPLRKSRIYAPFRSIGHVSNAVP 38
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 336 NGKTFNQVEIKPEMIGHYLGEFSVTYKPV 422
N +TF+ E E + +F VT KP+
Sbjct: 829 NSETFDDFEFSVEQFNSLINQFVVTGKPI 857
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 89 VNFLKIRFFLEGFVDLSHVSCLFDR 15
V+F ++F +VD V CLF R
Sbjct: 185 VDFSVLKFGQSAYVDFKGVKCLFSR 209
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 24.6 bits (51), Expect = 9.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 10 ILLSNKQETWLRSTKPSRKKRIFRKFTYRGS*SRSAPCICP 132
ILL+ K+ T + TK R R + S S PC+ P
Sbjct: 114 ILLTIKRATSSQETKRDRPLPNIRNSAPSATRSHSTPCVAP 154
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 189 LKRKPMALVKKLRRAKKEAPPNEKPEIVKTHL 284
L R+P + +K R KEA PN I++ L
Sbjct: 10 LPRRPPYMAEKARATLKEAFPNTDDAIIRAVL 41
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +3
Query: 231 AKKEAPPNEKPEIVKTHLRNMIIV----PEMVGSIVGIYNGKTFNQVEIKPEMIG 383
A E P+ P+++ + L + + P + GS+ +Y FN V++ + G
Sbjct: 192 AASEISPSSSPQLLTSFLPSGSVSNPSSPYLQGSVGALYEADAFNFVDVMSQASG 246
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,058,941
Number of Sequences: 5004
Number of extensions: 38376
Number of successful extensions: 111
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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