Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_M11
         (523 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ001258-1|CAA04632.1|  284|Homo sapiens NIPSNAP1 protein protein.     31   1.9  
BC006473-1|AAH06473.1|  284|Homo sapiens nipsnap homolog 1 (C. e...    31   2.4  
BC002371-1|AAH02371.1|  284|Homo sapiens nipsnap homolog 1 (C. e...    31   2.4  

>AJ001258-1|CAA04632.1|  284|Homo sapiens NIPSNAP1 protein protein.
          Length = 284

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +1

Query: 361 RNSHHYSVMFSCVLVXXVLTKFFRFLRPKIVFISNHRNSITRAFAFGNSPSPRM 522
           R S  Y  +  C+       ++  F R +   + + RN +   F+F N P PRM
Sbjct: 127 RFSGGYPALMDCMNKLKNNKEYLEFRRERTQMLLSRRNQLLLEFSFWNEPQPRM 180


>BC006473-1|AAH06473.1|  284|Homo sapiens nipsnap homolog 1 (C.
           elegans) protein.
          Length = 284

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +1

Query: 361 RNSHHYSVMFSCVLVXXVLTKFFRFLRPKIVFISNHRNSITRAFAFGNSPSPRM 522
           R S  Y  +  C+       ++  F R +   + + RN +   F+F N P PRM
Sbjct: 127 RFSGGYPALMDCMNKLKNNKEYLEFRRERSQMLLSRRNQLLLEFSFWNEPQPRM 180


>BC002371-1|AAH02371.1|  284|Homo sapiens nipsnap homolog 1 (C.
           elegans) protein.
          Length = 284

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +1

Query: 361 RNSHHYSVMFSCVLVXXVLTKFFRFLRPKIVFISNHRNSITRAFAFGNSPSPRM 522
           R S  Y  +  C+       ++  F R +   + + RN +   F+F N P PRM
Sbjct: 127 RFSGGYPALMDCMNKLKNNKEYLEFRRERSQMLLSRRNQLLLEFSFWNEPQPRM 180


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,627,018
Number of Sequences: 237096
Number of extensions: 1353223
Number of successful extensions: 1696
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1696
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)