Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_M11
         (523 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   5.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   5.8  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 518 RGEGEFP-KANARVIEFL*LEMNTILGLKNRKNLVNTXXT 402
           +    FP    A +IE   L M+ +  ++NR  LV+   T
Sbjct: 356 KANSPFPGSTEADIIELQDLRMSPLPSIRNRSGLVSGSST 395


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 322 QLYRNYYTNHCTSNHFSTLNT 260
           Q  RNYY N  T  H    NT
Sbjct: 712 QAVRNYYANLYTKYHGQYPNT 732


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 316 YRNYYTNHCTSNHFSTLN 263
           Y N Y N+C   +++ +N
Sbjct: 343 YNNNYNNNCKKLYYNIIN 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,166
Number of Sequences: 438
Number of extensions: 2858
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)