Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_M09
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ... 85 6e-18
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF... 85 8e-18
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 28 0.77
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.8
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 3.1
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.1
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 25 7.2
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 25 7.2
>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 218
Score = 85.0 bits (201), Expect = 6e-18
Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Frame = +3
Query: 198 WEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLI 377
W E + TF++VE+FW ++++I S L DY+ F++G+RP WED NK GG+W
Sbjct: 58 WNELQKNIITFNSVEEFWGIHNNINPASSLPIKSDYSFFREGVRPEWEDVHNKTGGKWAF 117
Query: 378 SLEKKQRFTDLDRFWLDVVLLLIGENFE-NSDEICGAVVNVR 500
K + LD WL VL IGE + E+ G V+N+R
Sbjct: 118 Q-NKGRGGNALDEMWLTTVLAAIGETLDPTGQEVMGVVINMR 158
>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
4F complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 84.6 bits (200), Expect = 8e-18
Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Frame = +3
Query: 198 WEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLI 377
W + L E+ +F TVE+FW ++ I S L DY+ F +GIRP WED N GG+W
Sbjct: 84 WSDLLKEIISFKTVEEFWGIFKTISKASMLPAKSDYSYFLKGIRPEWEDPQNMNGGKW-- 141
Query: 378 SLEKKQRFTDLDRFWLDVVLLLIGENFE-NSDEICGAVVNVR 500
+ + K + ++LD WL +VL IGE + E+ G V N+R
Sbjct: 142 AYQSKHKGSNLDELWLYMVLAAIGETLDPTGKEVTGVVCNMR 183
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 28.3 bits (60), Expect = 0.77
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = -3
Query: 254 SPKVFNCVECSQLNKILLPCFVSVIVVKXRDSTGFVXGC 138
+P + C C L ++LL C+ + ++ +V GC
Sbjct: 45 NPNIIKCGNCKNLCRLLLQCYAPLEGDNLKERALYVWGC 83
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 126 IFDQAPXYKTSGVSGFYDNDRNKTWEENLIELTTF 230
IF+ + S FY N +NK W N +L TF
Sbjct: 510 IFEIESSLRLSSNKVFYHNPKNKKWLINTSDLITF 544
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 3.1
Identities = 27/99 (27%), Positives = 46/99 (46%)
Frame = -1
Query: 487 TAPQISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSHIGRMPCLNT 308
T+P +S + S I +TSN N+ S F S + + +S+ I + LN+
Sbjct: 3801 TSPSLSETIPQSSSISEASTSNPNILSSTVLSFDSTITNS----FTTASTSIMKTTSLNS 3856
Query: 307 A*S*PWRSSDGSLI*WYNLQKSSTVSNVVNSIRFSSHVL 191
S W +S + +YN SSTV ++ R +S+ +
Sbjct: 3857 N-SYKWYNSTTQSV-YYN-ATSSTVPWSNSTFRNTSNTM 3892
>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 324 IRPMWEDDANKMGGRWLIS-LEKKQRFTDLDRFWLDVV 434
+ +WE N G +L +EKK F +DR+W V+
Sbjct: 161 VAALWEQ-FNIFHGSYLFDEIEKKSSFEIIDRWWTSVL 197
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 370 HLPPILLASSSHIGRMPCLNT 308
H+PP LLA+SS R+P ++T
Sbjct: 140 HMPPNLLAASSARLRLPPIST 160
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Frame = +3
Query: 129 FDQAPXYKTSGVSGFYDNDRNKTWEENLIELTTFDTVE-DFWRLYHHIKLPSELRQGHDY 305
F+ Y S + DN + + + T D VE ++W+L E+ G D
Sbjct: 344 FETGNYYTLSNFEKYCDNFKKNYFSKFKDSEITEDIVEKEYWKLVKDNNTSLEVEYGADL 403
Query: 306 AVFKQG 323
+ QG
Sbjct: 404 STLDQG 409
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,144,101
Number of Sequences: 5004
Number of extensions: 42299
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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