Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_M09
(541 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation fa... 141 3e-34
AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation fa... 138 3e-33
AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation fa... 137 5e-33
U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation fact... 113 6e-26
Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical pr... 113 8e-26
AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical... 104 5e-23
AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical... 104 5e-23
AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation i... 104 5e-23
U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation fact... 83 1e-16
AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation i... 83 1e-16
AF045642-12|AAD34648.1| 348|Caenorhabditis elegans Hypothetical... 29 2.8
Z71267-5|CAJ80828.1| 266|Caenorhabditis elegans Hypothetical pr... 28 4.9
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 28 4.9
Z81069-1|CAB02990.1| 359|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z48809-2|CAA88747.1| 406|Caenorhabditis elegans Hypothetical pr... 27 6.5
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 27 6.5
U15667-1|AAA51021.1| 562|Caenorhabditis elegans CeSema protein. 27 6.5
AL032653-2|CAC70145.1| 264|Caenorhabditis elegans Hypothetical ... 27 6.5
AL032653-1|CAA21714.1| 712|Caenorhabditis elegans Hypothetical ... 27 6.5
Z50872-8|CAA90758.1| 865|Caenorhabditis elegans Hypothetical pr... 27 8.6
AL031269-3|CAA20334.1| 865|Caenorhabditis elegans Hypothetical ... 27 8.6
AF016443-2|AAC24272.1| 359|Caenorhabditis elegans Hypothetical ... 27 8.6
AB055111-1|BAB62292.1| 865|Caenorhabditis elegans VHA-6 protein. 27 8.6
>AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform a protein.
Length = 248
Score = 141 bits (342), Expect = 3e-34
Identities = 69/147 (46%), Positives = 94/147 (63%), Gaps = 2/147 (1%)
Frame = +3
Query: 102 SNAEVPPVIFDQAPXYKTSGVSGFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPS 281
S+A VPP + + P + + DRNK WE+ L ++ FDTVEDFW LY+HI+
Sbjct: 20 SDASVPPELLTRHPLQNRWAL-WYLKADRNKEWEDCLKMVSLFDTVEDFWSLYNHIQSAG 78
Query: 282 ELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF- 458
L G DY +FK+GI+PMWED N GGRWL+ ++K++R LD +WL++++ ++GE F
Sbjct: 79 GLNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQRRTQLLDHYWLELLMAIVGEQFD 138
Query: 459 ENSDEICGAVVNVRPKVIN-CYWTADA 536
E D ICGAVVNVR K WT DA
Sbjct: 139 EYGDYICGAVVNVRQKGDKVSLWTRDA 165
>AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform c protein.
Length = 250
Score = 138 bits (333), Expect = 3e-33
Identities = 71/149 (47%), Positives = 95/149 (63%), Gaps = 4/149 (2%)
Frame = +3
Query: 102 SNAEVPPVIFDQAPXYKTSGVSGFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPS 281
S+A VPP + + P + + DRNK WE+ L ++ FDTVEDFW LY+HI+
Sbjct: 20 SDASVPPELLTRHPLQNRWAL-WYLKADRNKEWEDCLKMVSLFDTVEDFWSLYNHIQSAG 78
Query: 282 ELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKK-QRFTD-LDRFWLDVVLLLIGEN 455
L G DY +FK+GI+PMWED N GGRWL+ ++K+ QR T LD +WL++++ ++GE
Sbjct: 79 GLNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQLQRRTQLLDHYWLELLMAIVGEQ 138
Query: 456 F-ENSDEICGAVVNVRPKVIN-CYWTADA 536
F E D ICGAVVNVR K WT DA
Sbjct: 139 FDEYGDYICGAVVNVRQKGDKVSLWTRDA 167
>AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform b protein.
Length = 251
Score = 137 bits (331), Expect = 5e-33
Identities = 71/150 (47%), Positives = 95/150 (63%), Gaps = 5/150 (3%)
Frame = +3
Query: 102 SNAEVPPVIFDQAPXYKTSGVSGFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPS 281
S+A VPP + + P + + DRNK WE+ L ++ FDTVEDFW LY+HI+
Sbjct: 20 SDASVPPELLTRHPLQNRWAL-WYLKADRNKEWEDCLKMVSLFDTVEDFWSLYNHIQSAG 78
Query: 282 ELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKK--QRFTD-LDRFWLDVVLLLIGE 452
L G DY +FK+GI+PMWED N GGRWL+ ++K+ QR T LD +WL++++ ++GE
Sbjct: 79 GLNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQKLQRRTQLLDHYWLELLMAIVGE 138
Query: 453 NF-ENSDEICGAVVNVRPKVIN-CYWTADA 536
F E D ICGAVVNVR K WT DA
Sbjct: 139 QFDEYGDYICGAVVNVRQKGDKVSLWTRDA 168
>U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 2 protein.
Length = 228
Score = 113 bits (273), Expect = 6e-26
Identities = 56/125 (44%), Positives = 78/125 (62%), Gaps = 3/125 (2%)
Frame = +3
Query: 141 PXYKTS-GVSGFYDND-RNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVF 314
P YK + +Y ND RNK+WEE L + TF +V +FW L+ IK PS L DY VF
Sbjct: 15 PVYKLKRNWTWWYLNDERNKSWEERLKNVKTFSSVGEFWALHDSIKPPSGLNPPSDYNVF 74
Query: 315 KQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEICGAVV 491
+ GI PMWE N+ GGRWLI++EK + +D W ++++ +IGE F ++ + +CG V
Sbjct: 75 RDGIEPMWEVPQNQNGGRWLITIEKGRTPEIMDTIWTEILMAMIGEQFSDDIESLCGIVC 134
Query: 492 NVRPK 506
NVR K
Sbjct: 135 NVRGK 139
>Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical
protein F53A2.6 protein.
Length = 212
Score = 113 bits (272), Expect = 8e-26
Identities = 57/136 (41%), Positives = 83/136 (61%), Gaps = 4/136 (2%)
Frame = +3
Query: 138 APXY--KTSGVSGFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAV 311
AP Y K + + +++RNK+WE+ L ++ TF+TV +FW LY I+ PS L DY V
Sbjct: 9 APIYPLKRNWTWWYLNDERNKSWEDRLKKVYTFNTVSEFWALYDAIRPPSGLNALCDYNV 68
Query: 312 FKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEICGAV 488
F+ I+PMWE N GGRWLI ++K + +D WL++++ L+GE F ++ + ICG V
Sbjct: 69 FRDDIQPMWEVPENSNGGRWLIVIDKGKTPEMVDAIWLEILMALVGEQFGKDMESICGLV 128
Query: 489 VNVRPKVIN-CYWTAD 533
NVR K WT D
Sbjct: 129 CNVRGKGSKISVWTKD 144
>AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical
protein Y57A10A.30b protein.
Length = 201
Score = 104 bits (249), Expect = 5e-23
Identities = 50/111 (45%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Frame = +3
Query: 171 FYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDA 350
F ++DRN +W++ L ++ TF+TV +FW Y I PS L DY VF+ I+P WE
Sbjct: 19 FLNDDRNASWQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRDDIQPKWEAPE 78
Query: 351 NKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEICGAVVNVR 500
N GGRWLI + K + LD WL+++L LIGE F ++ + ICG V NVR
Sbjct: 79 NWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNVR 129
>AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical
protein Y57A10A.30a protein.
Length = 240
Score = 104 bits (249), Expect = 5e-23
Identities = 50/111 (45%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Frame = +3
Query: 171 FYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDA 350
F ++DRN +W++ L ++ TF+TV +FW Y I PS L DY VF+ I+P WE
Sbjct: 58 FLNDDRNASWQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRDDIQPKWEAPE 117
Query: 351 NKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEICGAVVNVR 500
N GGRWLI + K + LD WL+++L LIGE F ++ + ICG V NVR
Sbjct: 118 NWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNVR 168
>AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 5 protein.
Length = 201
Score = 104 bits (249), Expect = 5e-23
Identities = 50/111 (45%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Frame = +3
Query: 171 FYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDA 350
F ++DRN +W++ L ++ TF+TV +FW Y I PS L DY VF+ I+P WE
Sbjct: 19 FLNDDRNASWQDRLKKVYTFNTVPEFWAFYEAILPPSGLNDLCDYNVFRDDIQPKWEAPE 78
Query: 351 NKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEICGAVVNVR 500
N GGRWLI + K + LD WL+++L LIGE F ++ + ICG V NVR
Sbjct: 79 NWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESICGLVCNVR 129
>U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 4 protein.
Length = 212
Score = 83.0 bits (196), Expect = 1e-16
Identities = 37/89 (41%), Positives = 55/89 (61%)
Frame = +3
Query: 234 TVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLD 413
+VE FW + H K P+E+ D FK G++P+WED AN GG+W+I L+K
Sbjct: 66 SVEQFWSIMVHFKRPTEMCDKADIHFFKTGVKPVWEDPANCKGGKWIIRLKKGLS----T 121
Query: 414 RFWLDVVLLLIGENFENSDEICGAVVNVR 500
R W ++++ +IGE F DE+CGAV ++R
Sbjct: 122 RIWENLLMAIIGEQFLVGDELCGAVCSIR 150
>AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 4 protein.
Length = 212
Score = 83.0 bits (196), Expect = 1e-16
Identities = 37/89 (41%), Positives = 55/89 (61%)
Frame = +3
Query: 234 TVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLD 413
+VE FW + H K P+E+ D FK G++P+WED AN GG+W+I L+K
Sbjct: 66 SVEQFWSIMVHFKRPTEMCDKADIHFFKTGVKPVWEDPANCKGGKWIIRLKKGLS----T 121
Query: 414 RFWLDVVLLLIGENFENSDEICGAVVNVR 500
R W ++++ +IGE F DE+CGAV ++R
Sbjct: 122 RIWENLLMAIIGEQFLVGDELCGAVCSIR 150
>AF045642-12|AAD34648.1| 348|Caenorhabditis elegans Hypothetical
protein C17H12.8 protein.
Length = 348
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -1
Query: 499 LTLTTAPQISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSHIG 329
LT T S++F F TT Q ++KSV R++ H +L + +H+G
Sbjct: 84 LTRTIVSSRSAKFVHFYIFPNTTTKFQVITKSVNMHSSFRIVVHFERMLNTTVTHLG 140
>Z71267-5|CAJ80828.1| 266|Caenorhabditis elegans Hypothetical
protein W01A8.7 protein.
Length = 266
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 288 RQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVV 434
+ GH Y K+ + WE + N G+W+ K++ +D+FW++V+
Sbjct: 227 KAGH-YQHLKKILYKKWESENN---GKWI-----KRKSNQVDKFWIEVI 266
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = -1
Query: 478 QISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSH 335
++ E K +KR + K C F + +S +L++SS H
Sbjct: 1345 RLEVEVKKNKGVKRSVVKKELTFADYKNCLFDKTVSRKQQMLISSSKH 1392
>Z81069-1|CAB02990.1| 359|Caenorhabditis elegans Hypothetical
protein F25H9.1 protein.
Length = 359
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 197 CFVSVIVVKXRDSTGFVXGCLIKNYRGHLRVTVGLRFSGSRPLYFFC 57
CF++ IV + + GC+ N +G R+ +G + P Y+ C
Sbjct: 264 CFIT-IVDHTSSNNSYYKGCITANEQGEHRIQLGHSYLNDVP-YYIC 308
>Z48809-2|CAA88747.1| 406|Caenorhabditis elegans Hypothetical
protein T01E8.4 protein.
Length = 406
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +1
Query: 157 VESLXFTTMTETK-HGRRILLS*LHSTQLKTFGDCTIILSY-RQNFAKVMTMQYSSKAFV 330
++S F + + K H R ++ + ++ T G+ +++ R+NF+K + +YS A+
Sbjct: 229 IDSRTFQVVADHKLHKRAVIALAVQGDKIFTSGEDRLMMMVDRRNFSKPVLFEYSPTAYK 288
Query: 331 LC 336
C
Sbjct: 289 SC 290
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 478 QISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSHIGRMP 320
Q S S S + ++T + SKS +RC+F L L+ SSS R P
Sbjct: 4 QASQRSSSTSAVAQKTRERRK-SKSRRRCWFGCLWLSSRVSLIRSSSRFSRSP 55
>U15667-1|AAA51021.1| 562|Caenorhabditis elegans CeSema protein.
Length = 562
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 429 VVLLLIGENFENSDEICGAVVNVRPK-VINCYWTAD 533
+ LLL+ +S+ I G VVN+RPK +IN D
Sbjct: 5 LTLLLLFNVVRSSEAITGGVVNLRPKQIINSVGIGD 40
>AL032653-2|CAC70145.1| 264|Caenorhabditis elegans Hypothetical
protein Y54E5B.1b protein.
Length = 264
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 429 VVLLLIGENFENSDEICGAVVNVRPK-VINCYWTAD 533
+ LLL+ +S+ I G VVN+RPK +IN D
Sbjct: 5 LTLLLLFNVVRSSEAITGGVVNLRPKQIINSVGIGD 40
>AL032653-1|CAA21714.1| 712|Caenorhabditis elegans Hypothetical
protein Y54E5B.1a protein.
Length = 712
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 429 VVLLLIGENFENSDEICGAVVNVRPK-VINCYWTAD 533
+ LLL+ +S+ I G VVN+RPK +IN D
Sbjct: 5 LTLLLLFNVVRSSEAITGGVVNLRPKQIINSVGIGD 40
>Z50872-8|CAA90758.1| 865|Caenorhabditis elegans Hypothetical
protein VW02B12L.1 protein.
Length = 865
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +3
Query: 267 IKLPSELRQGHDYAVFKQGIRPMWEDDANKM 359
+ P E+ HDY + G+ P+W N++
Sbjct: 515 LTFPPEIAFNHDYGPYPFGVDPVWNLAINRL 545
>AL031269-3|CAA20334.1| 865|Caenorhabditis elegans Hypothetical
protein VW02B12L.1 protein.
Length = 865
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +3
Query: 267 IKLPSELRQGHDYAVFKQGIRPMWEDDANKM 359
+ P E+ HDY + G+ P+W N++
Sbjct: 515 LTFPPEIAFNHDYGPYPFGVDPVWNLAINRL 545
>AF016443-2|AAC24272.1| 359|Caenorhabditis elegans Hypothetical
protein C17E7.6 protein.
Length = 359
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 389 FLKTDKPSSSHLVSIVFPHRTNALLEYCIVM 297
F D P++ +VS + T+AL +YC++M
Sbjct: 279 FYDQDNPNAQQIVSAQQQNFTSALSQYCLLM 309
>AB055111-1|BAB62292.1| 865|Caenorhabditis elegans VHA-6 protein.
Length = 865
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +3
Query: 267 IKLPSELRQGHDYAVFKQGIRPMWEDDANKM 359
+ P E+ HDY + G+ P+W N++
Sbjct: 515 LTFPPEIAFNHDYGPYPFGVDPVWNLAINRL 545
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,867,194
Number of Sequences: 27780
Number of extensions: 237164
Number of successful extensions: 609
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -