Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_M07
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.16 |iws1||transcription elongation factor complex subun...    29   0.26 
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   2.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   3.2  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   4.2  
SPAC17H9.16 |tom22||mitochondrial TOM complex subunit Tom22|Schi...    24   7.3  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    24   7.3  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    24   9.7  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.7  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    24   9.7  

>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 29.1 bits (62), Expect = 0.26
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 271 VDISDITEHSESYLEN--EHLKFALTEATEADNNXLE 375
           VD++D+T H +  L+N  E L F+  E ++ D N  E
Sbjct: 31  VDVADVTTHVDEDLDNKEEALDFSEDELSDLDENQFE 67


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 223 KPSSLQNMSEEECHED--VDISDITEHSESYLENEHLKFALTEATEADN 363
           K SS +N S E   E   VD  ++  HS  + E EH K +  +  +  N
Sbjct: 3   KNSSHENQSSENIIEFPYVDFEELNVHSNIFSELEHAKPSTQQQQQQQN 51


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 229 SSLQNMSEEECHEDVDISDITEHSESYLENEHLKF 333
           SS  N+S ++   +  I+ +T++ + Y+E  HL+F
Sbjct: 132 SSNPNISRKQSFIEYLIAKLTDNIQIYIERIHLRF 166


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 220 YKPSSLQNMSEEECHEDVDI 279
           Y+PSSLQ +   + H  VD+
Sbjct: 314 YQPSSLQPLESRKLHSKVDV 333


>SPAC17H9.16 |tom22||mitochondrial TOM complex subunit
           Tom22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = +1

Query: 265 EDVDISDITEHSESYLENEHLKFALTEATEADNNXLEFE 381
           E VD +++    ++ +E +   +A  +  E+D++  +FE
Sbjct: 6   EVVDETEVQNEQQTVIEKDQYIYAQEDVEESDSDESDFE 44


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +2

Query: 89  INYFILRLSKITLSAYYSLISA*KTILARSYI-----LEKDYYLFYT 214
           I  FI   S    S YY+LI+  +T+L    +     L + Y++F+T
Sbjct: 271 IERFIFAPSTSRTSCYYTLITLNQTVLTHKQVDVANLLIEIYFVFFT 317


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 277 ISDITEHSESYLENEHLKFALTEATEADNNXLEF 378
           I+ I +HS SY +   +     E    D N L F
Sbjct: 215 IASILQHSNSYFDQHTISSITDERDLEDKNKLPF 248


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 157 KDYIGS*LYFRKRLLFILHRKYKPSSLQNM 246
           KDY+ + +Y   R LF+L +     SL+++
Sbjct: 437 KDYLDNDIYVHARCLFLLTKTLNLDSLKSI 466


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 286 ITEHSESYLENEHLKFALTEATEADNNXLEFELN 387
           ITE S  Y+ + HL++   E+     + LE+  N
Sbjct: 163 ITEASNEYVYSFHLEYVPLESNTFSASALEYSKN 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,213,511
Number of Sequences: 5004
Number of extensions: 21360
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)