Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_M07
         (392 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   2.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   6.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   6.7  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 18  TRSCFFTNYKLNFLYLDSVN 77
           + S  FTNYKL + Y   V+
Sbjct: 559 SNSAVFTNYKLYWRYWQGVD 578


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -2

Query: 265 RGILLQTYFVTMKVYIYGVK*IIVFF 188
           RG+L  +Y V   +++Y V   ++ +
Sbjct: 209 RGLLSASYLVCYGIWVYFVPLFLIIY 234


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 179 YILEKDYYLFYTVNINL 229
           YI+ +   LFYTVN+ L
Sbjct: 226 YIIIRRKTLFYTVNLIL 242


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -2

Query: 265 RGILLQTYFVTMKVYIYGVK*IIVFF 188
           RG+L  +Y V   +++Y V   ++ +
Sbjct: 85  RGLLSASYLVCYGIWVYFVPLFLIIY 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,144
Number of Sequences: 438
Number of extensions: 1350
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)