Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_L22
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   129   4e-31
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   129   4e-31
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   6.5  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  129 bits (311), Expect = 4e-31
 Identities = 55/85 (64%), Positives = 68/85 (80%)
 Frame = +3

Query: 57  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 236
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 237 TCQVAYSRIEGDHIVCAAYSHELPR 311
           TCQ+  SR+ GD+++  A+S ELPR
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPR 85



 Score = 72.5 bits (170), Expect = 4e-14
 Identities = 37/86 (43%), Positives = 47/86 (54%)
 Frame = +1

Query: 313 YGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCY 492
           YG+K GL N+ AAY+TG                              E +++GP  F+ +
Sbjct: 86  YGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVF 145

Query: 493 LDVGLARTTTGARVFGAMKGAVDGGL 570
           LDVGL RT+TG+RVFGAMKGA DGGL
Sbjct: 146 LDVGLKRTSTGSRVFGAMKGASDGGL 171


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  129 bits (311), Expect = 4e-31
 Identities = 55/85 (64%), Positives = 68/85 (80%)
 Frame = +3

Query: 57  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 236
           M F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60

Query: 237 TCQVAYSRIEGDHIVCAAYSHELPR 311
           TCQ+  SR+ GD+++  A+S ELPR
Sbjct: 61  TCQIVSSRVNGDYVLAHAHSSELPR 85



 Score = 72.5 bits (170), Expect = 4e-14
 Identities = 37/86 (43%), Positives = 47/86 (54%)
 Frame = +1

Query: 313 YGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCY 492
           YG+K GL N+ AAY+TG                              E +++GP  F+ +
Sbjct: 86  YGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVF 145

Query: 493 LDVGLARTTTGARVFGAMKGAVDGGL 570
           LDVGL RT+TG+RVFGAMKGA DGGL
Sbjct: 146 LDVGLKRTSTGSRVFGAMKGASDGGL 171


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -2

Query: 185 FVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNESHIL---NLSYKVAS 27
           F  +L     T + +SF F+T  +  +  +  LF  H F+ S ++   N+ Y+V S
Sbjct: 469 FATILAAFGTTLLSLSFVFSTSAQELMSSIIFLFSKHPFDISDVVIVNNIKYEVVS 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,798
Number of Sequences: 5004
Number of extensions: 49779
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)