Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_L14
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 144 7e-36
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 138 8e-34
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 69 5e-13
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 50 2e-07
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz... 27 2.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.1
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 3.6
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 26 3.6
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po... 25 6.3
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 25 8.4
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 144 bits (350), Expect = 7e-36
Identities = 63/78 (80%), Positives = 72/78 (92%)
Frame = +2
Query: 113 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 292
+YGKKS L+F++YPAPQVST+VVEPYNS+LTTH TL++SDC FMVDNEA YDICRRNLDI
Sbjct: 164 EYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDI 223
Query: 293 ERPTYTNLNRLIGQIVSS 346
ERPTY NLNRLI Q+VSS
Sbjct: 224 ERPTYENLNRLIAQVVSS 241
Score = 90.6 bits (215), Expect = 1e-19
Identities = 38/53 (71%), Positives = 44/53 (83%)
Frame = +1
Query: 436 FPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCXPRHGKYMACCMLY 594
FPLVTY+P++SA KA+HE SV EITN CFEP NQMVKC PR G+YMA C+LY
Sbjct: 271 FPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLY 323
Score = 63.3 bits (147), Expect = 3e-11
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +3
Query: 348 ITASLRFDGALNVDLTEFQTNLVPYPRIHFP 440
ITASLRF G+LNVDL EFQTNLVPYPRIHFP
Sbjct: 242 ITASLRFAGSLNVDLNEFQTNLVPYPRIHFP 272
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 138 bits (333), Expect = 8e-34
Identities = 60/78 (76%), Positives = 71/78 (91%)
Frame = +2
Query: 113 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 292
+Y KKSKL+F++YPAPQVST+VVEPYNS+LTTH TL+ +DC FMVDNE+ YDICRRNLDI
Sbjct: 160 EYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDI 219
Query: 293 ERPTYTNLNRLIGQIVSS 346
ERP+Y NLNRLI Q+VSS
Sbjct: 220 ERPSYENLNRLIAQVVSS 237
Score = 91.9 bits (218), Expect = 6e-20
Identities = 39/53 (73%), Positives = 44/53 (83%)
Frame = +1
Query: 436 FPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCXPRHGKYMACCMLY 594
FPLVTYAP++SA KA+HE SV EITN CFEP NQMVKC PR G+YMA C+LY
Sbjct: 267 FPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLY 319
Score = 64.9 bits (151), Expect = 8e-12
Identities = 28/31 (90%), Positives = 30/31 (96%)
Frame = +3
Query: 348 ITASLRFDGALNVDLTEFQTNLVPYPRIHFP 440
ITASLRF+G+LNVDL EFQTNLVPYPRIHFP
Sbjct: 238 ITASLRFEGSLNVDLAEFQTNLVPYPRIHFP 268
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 68.9 bits (161), Expect = 5e-13
Identities = 30/77 (38%), Positives = 48/77 (62%)
Frame = +2
Query: 113 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 292
+Y + F++ PAP+ S VVEPYN+ L+ H +E+SD F +DNEA+ I L I
Sbjct: 158 EYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKI 217
Query: 293 ERPTYTNLNRLIGQIVS 343
+ P+Y +LN L+ +++
Sbjct: 218 KSPSYDDLNHLVSAVMA 234
Score = 42.3 bits (95), Expect = 5e-05
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +1
Query: 436 FPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCXPRHGKYMACCMLY 594
F +V +AP+ + + + +SV E+T F+ N MV PRHG+Y+ L+
Sbjct: 265 FFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALF 317
Score = 41.9 bits (94), Expect = 7e-05
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 348 ITASLRFDGALNVDLTEFQTNLVPYPRIHF 437
+T S RF G LN DL + N+VP+PR+HF
Sbjct: 236 VTTSFRFPGELNSDLRKLAVNMVPFPRLHF 265
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 50.4 bits (115), Expect = 2e-07
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +2
Query: 116 YGKKSKLEFAIYPAPQ-VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 292
Y KK ++++P Q VS VV+PYNS+L ++D ++DN A+ I L
Sbjct: 161 YPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHT 220
Query: 293 ERPTYTNLNRLIGQIVSSN 349
+ PT+ N+L+ ++S++
Sbjct: 221 QNPTFHQQNQLVSTVMSAS 239
Score = 32.7 bits (71), Expect = 0.042
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 351 TASLRFDGALNVDLTEFQTNLVPYPRIHF 437
T +LR+ G +N DL +L+P PR HF
Sbjct: 240 TTTLRYPGYMNNDLVSIIASLIPSPRCHF 268
>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
Alg11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 471
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = -2
Query: 424 G*GTKLVWNSVRSTFRAPSNLKEAVIRGDNLSDETIQVGVGWALNVEITAADVI 263
G G +++W +V+S N+ V GDN+S I V +++ ++ ++
Sbjct: 68 GGGERVLWTAVKSVQTEFPNVISVVYTGDNVSKAEILRRVKNTFEIDLDSSKIV 121
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 452 TRQSSLPRRPTMNSFPSPRSQTHASSPPTR 541
T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1251 TPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 458 QSSLPRRPTMNSFPSPRSQTHASSPPTR 541
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 425 PYPLSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPT 538
PY + + RT S R T+ S SP S+ HA + T
Sbjct: 345 PYLVPNSGRTLNSENARESTIRSVNSPFSEDHADASLT 382
>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 74 LGSLPY*WSVSPXDYGKKSKLEFAIYPAPQVSTAVVE 184
LGSL Y SP G KS L+ +P P + +++
Sbjct: 34 LGSLQYFQCASPQSIGGKSNLKQLQWPKPPKNILILK 70
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 379 RAPSNLKEAVIRGDNLSDETIQVGVGWALNVEITAADVIDG 257
R+ SN K+ D ++T VG+G AL I + D +DG
Sbjct: 177 RSNSNDKQKSSDNDEDPNDTT-VGIGAALAASILSVDSVDG 216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,189
Number of Sequences: 5004
Number of extensions: 46628
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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