Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_L13
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 204 1e-53
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 201 6e-53
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 31 0.14
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 27 2.2
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 25 6.7
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr... 25 8.9
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 25 8.9
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 8.9
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 204 bits (497), Expect = 1e-53
Identities = 107/173 (61%), Positives = 130/173 (75%)
Frame = +1
Query: 106 AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 285
A S++ + +SL + IKLF ++ V+V D+SL DYI++ + LPH+AGR+
Sbjct: 2 AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56
Query: 286 HKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGEXPLQVLVTXXI 465
KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT + PLQVLV
Sbjct: 57 TKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVA 116
Query: 466 NSGPREDSTRIGRAGTVRRQAVDVHPXRRVNQAIWLLCTGAREAAFXNIKTIA 624
GPREDSTRIG AGTVRRQAVDV P RRVNQA+ L+ GAREAAF N+K+I+
Sbjct: 117 ACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSIS 169
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 201 bits (491), Expect = 6e-53
Identities = 107/169 (63%), Positives = 126/169 (74%), Gaps = 3/169 (1%)
Frame = +1
Query: 127 TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRF 297
T SL + E IKLF ++ V+V D+SL DYI++ + LPH+AGR+ KRF
Sbjct: 3 TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRF 60
Query: 298 RKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGEXPLQVLVTXXINSGP 477
RKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT + PLQVLV GP
Sbjct: 61 RKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGP 120
Query: 478 REDSTRIGRAGTVRRQAVDVHPXRRVNQAIWLLCTGAREAAFXNIKTIA 624
REDSTRIG AGTVRRQAVDV P RRVNQA+ L+ GAREAAF N+K+I+
Sbjct: 121 REDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSIS 169
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 31.1 bits (67), Expect = 0.14
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +1
Query: 319 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGEXPLQVL 450
V+ L N +M +GKK A +IV A II TGE P+ VL
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVL 165
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 142 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 285
+ ADI + FGR ++++++ + I+V+EKYAK P R A
Sbjct: 7 KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.4 bits (53), Expect = 6.7
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -3
Query: 304 LYGNACVHTCQLNEVNILRTSL*RKCSPAETYQRLAHRSNSICRKA*FQECRRL 143
L N C+ LNE ++ + SL R P++ ++ R +S+ +K+ E R L
Sbjct: 147 LLNNCCIGIANLNEDSVHKISLTRSGKPSQLV-TVSCRHSSVIQKSYGSEKRYL 199
>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 131 CLYHKPPTFLKSSFS 175
C H P TFL SSFS
Sbjct: 117 CFIHPPITFLSSSFS 131
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 327 PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRXPSAST 449
PYK+ + + W + G+TY + + + L R +AST
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMR-ETAST 177
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 8.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 277 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIH 417
+Y KR A+ +V R H R N KL + + H F ++H
Sbjct: 390 KYPRKRQEIAE--LVIRCLQDRSSHVRRNAIKLFSKLLTTHPFSVMH 434
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,483
Number of Sequences: 5004
Number of extensions: 47322
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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