Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_L13
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   269   9e-73
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    30   1.2  
AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear recep...    30   1.2  
Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  269 bits (660), Expect = 9e-73
 Identities = 129/160 (80%), Positives = 138/160 (86%)
 Frame = +1

Query: 145 AADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVE 324
           A + PE+ LFG+WS   V VSD+SL DYI VKEK AKYLPHSAGR+  +RFRKA CPIVE
Sbjct: 17  ATEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVE 76

Query: 325 RLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGEXPLQVLVTXXINSGPREDSTRIGR 504
           RL NSLMMHGRNNGKKLM VRIVKHAFEII+LLTGE P+QVLV   INSGPREDSTRIGR
Sbjct: 77  RLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGR 136

Query: 505 AGTVRRQAVDVHPXRRVNQAIWLLCTGAREAAFXNIKTIA 624
           AGTVRRQAVDV P RRVNQAIWLLCTGAREAAF N+KTIA
Sbjct: 137 AGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIA 176


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 600 CSLTCTCAQKP--DCLVDSAXRVHINGLTTNCTRTTD 496
           C+ +C C + P   C+VD   +  +NG ++N +  TD
Sbjct: 495 CTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 531


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 600 CSLTCTCAQKP--DCLVDSAXRVHINGLTTNCTRTTD 496
           C+ +C C + P   C+VD   +  +NG ++N +  TD
Sbjct: 458 CTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 494


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 600 CSLTCTCAQKP--DCLVDSAXRVHINGLTTNCTRTTD 496
           C+ +C C + P   C+VD   +  +NG ++N +  TD
Sbjct: 495 CTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 531


>AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 519

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 600 CSLTCTCAQKP--DCLVDSAXRVHINGLTTNCTRTTD 496
           C+ +C C + P   C+VD   +  +NG ++N +  TD
Sbjct: 197 CTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 233


>Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical
           protein C26C6.8 protein.
          Length = 273

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 464 STXDPVKIRLGSVVRVQFVVKPLMCTLXAESTKQSGFCAQVHVRLHSXILKQS 622
           S  D + ++ G  V V  +  P   T    S  QSGF    HV++   IL+Q+
Sbjct: 149 SAPDDISVKDGESVTVLNISDPEW-TYIRNSDNQSGFVPSSHVKIPHEILQQA 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,886,204
Number of Sequences: 27780
Number of extensions: 277915
Number of successful extensions: 663
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)