Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_L09
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.1  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   5.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.2  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 40  QDEFPQAAEEACSLCYAMW*KEG 108
           +DEF +  +  CSLC   + ++G
Sbjct: 263 EDEFDEFGDSKCSLCQRRFEEQG 285


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 138 ISLISFGSNHTFFLPHRITEAASLFCSLRELILXTVRSNAHK 13
           + +IS   +  FFL   + EAA  F ++ +  L   R N  K
Sbjct: 446 VVVISNDKSTEFFLATVVEEAACRFSAVAQAQLGGERQNGRK 487


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 399 RCLSIFLAVLYFRSNFLRTLCLC 331
           RC+ +FL+V+   S F+  +  C
Sbjct: 6   RCIYLFLSVILITSYFVTPVMPC 28


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 75  ASLFCSLRELILXTVRSNAHKKAKS 1
           ASLFC L++        + +K+A+S
Sbjct: 234 ASLFCGLQKYTRSFAHQSINKEARS 258


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 75  ASLFCSLRELILXTVRSNAHKKAKS 1
           ASLFC L++        + +K+A+S
Sbjct: 229 ASLFCGLQKYTRSFAHQSINKEARS 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,130
Number of Sequences: 438
Number of extensions: 3655
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)