Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_L02
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    27   1.8  
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.4  

>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
 Frame = +2

Query: 11  SIKKATDKIPLKLTNTISE----------PRSKDSNCTKSCNTKTKREQISSITKQHQQK 160
           S KKATD +  K+  +++            RSK      S +     EQIS  TK+ +QK
Sbjct: 113 SKKKATDSVSDKIDESVASYDSSTHLRRSSRSKKPVNYNSSSESESEEQISKATKKVKQK 172

Query: 161 CKESFME 181
            +E ++E
Sbjct: 173 EEEEYVE 179


>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 271 LLSKSLNCCCNSFFIFSGTGT 209
           LL  S NCC NS+ + +GT T
Sbjct: 32  LLPFSSNCCRNSYTVNNGTFT 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,036
Number of Sequences: 5004
Number of extensions: 47437
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)