Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_L02
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   2.5  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   2.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.9  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        22   5.9  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 633 MKISKWYNEIILLYATNFAFVF 568
           +KI KW N+I+ +  T++  VF
Sbjct: 91  LKIYKWNNQILHILWTSYKKVF 112


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 633 MKISKWYNEIILLYATNFAFVF 568
           +KI KW N+I+ +  T++  VF
Sbjct: 74  LKIYKWNNQILHILWTSYKKVF 95


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -3

Query: 583 LCFCFFFVKIQKAICPNSSG 524
           +C CF +  + + +C N  G
Sbjct: 369 VCMCFIYASLLEFVCVNYVG 388


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -3

Query: 583 LCFCFFFVKIQKAICPNSSG 524
           +C CF +  + + +C N  G
Sbjct: 338 VCMCFIYASLLEFVCVNYVG 357


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -3

Query: 583 LCFCFFFVKIQKAICPNSSG 524
           +C CF +  + + +C N  G
Sbjct: 389 VCMCFIYASLLEFVCVNYVG 408


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -3

Query: 583 LCFCFFFVKIQKAICPNSSG 524
           +C CF +  + + +C N  G
Sbjct: 338 VCMCFIYASLLEFVCVNYVG 357


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 645 KIILMKISKWYNEIILLYATNFAFVFFL*KSKKQF 541
           K+ LM IS W+         NF+ +F L K    F
Sbjct: 278 KVALMTISLWFMAWTPYLVINFSGIFNLVKISPLF 312


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 645 KIILMKISKWYNEIILLYATNFAFVFFL*KSKKQF 541
           K+ LM IS W+         NF+ +F L K    F
Sbjct: 28  KVALMTISLWFMAWTPYLVINFSGIFNLVKISPLF 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,225
Number of Sequences: 438
Number of extensions: 3209
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)