Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_K23
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   193   1e-51
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   193   1e-51
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      28   0.090
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  193 bits (471), Expect = 1e-51
 Identities = 89/105 (84%), Positives = 98/105 (93%)
 Frame = +3

Query: 231 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 410
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 411 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGRV 545
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLG V
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGV 105



 Score = 39.1 bits (87), Expect = 4e-05
 Identities = 18/32 (56%), Positives = 18/32 (56%)
 Frame = +2

Query: 542 GVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYP 637
           GVDK TQF RYF            TSLCFVYP
Sbjct: 104 GVDKNTQFLRYFVGNLASGGAAGATSLCFVYP 135



 Score = 28.7 bits (61), Expect = 0.052
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +3

Query: 258 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 437
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 438 LSFWRGNFANVIRYFPTQALNFAFKD 515
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.5 bits (58), Expect = 0.12
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 318 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 476
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  193 bits (471), Expect = 1e-51
 Identities = 89/105 (84%), Positives = 98/105 (93%)
 Frame = +3

Query: 231 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 410
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 411 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGRV 545
           VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLG V
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGV 105



 Score = 39.1 bits (87), Expect = 4e-05
 Identities = 18/32 (56%), Positives = 18/32 (56%)
 Frame = +2

Query: 542 GVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYP 637
           GVDK TQF RYF            TSLCFVYP
Sbjct: 104 GVDKNTQFLRYFVGNLASGGAAGATSLCFVYP 135



 Score = 28.7 bits (61), Expect = 0.052
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +3

Query: 258 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 437
           F  +  +GG + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGI 172

Query: 438 LSFWRGNFANVIRYFPTQALNFAFKD 515
              +RG   +V      +A  F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198



 Score = 27.5 bits (58), Expect = 0.12
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 318 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 476
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 0.090
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 650 CEVEGGTRSTERWLRRHHRRPDYQRSNARTASSC 549
           C+V G T ST+  L+RH  +  +Q  N+   + C
Sbjct: 374 CDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCALC 407


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 650 CEVEGGTRSTERWLR 606
           CEV G T  T  WL+
Sbjct: 829 CEVHGDTPVTVTWLK 843


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 650 CEVEGGTRSTERWLR 606
           CEV G T  T  WL+
Sbjct: 825 CEVHGDTPVTVTWLK 839


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,319
Number of Sequences: 438
Number of extensions: 3602
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)