Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_K20
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    27   0.87 
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    26   2.7  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    24   8.1  

>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 27.5 bits (58), Expect = 0.87
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +3

Query: 153 FQSLLSXITIVDMHLRLSKIIFSKYHGPE*NWFTGNILEMCK-NW*TQIPLC---CSLLY 320
           F    + + I+D+HLR + I F +Y G   N      L++ + +  TQ+ LC   C  L 
Sbjct: 676 FSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDLLRSDSGTQVLLCSLKCGALG 735

Query: 321 IN 326
           +N
Sbjct: 736 LN 737


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +1

Query: 175 LLLLICT-CAYLRSFFPSIMDRN 240
           L ++ CT C++L+ F P I DRN
Sbjct: 187 LEVVSCTRCSFLKKFNPDIFDRN 209


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 142 LYLIFKAFYPVLLLLICTCAYLRSFF 219
           L L+F A+  V  +++CT  Y++SFF
Sbjct: 137 LQLMFAAY--VFSVVLCTFCYVQSFF 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,620,752
Number of Sequences: 5004
Number of extensions: 33146
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)