Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_K11
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    32   0.055
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    29   0.51 
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    28   0.89 
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    27   1.2  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.1  
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    26   3.6  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   4.7  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    25   6.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   6.3  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    25   6.3  
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   8.3  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   8.3  

>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 31.9 bits (69), Expect = 0.055
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +3

Query: 210 DNEFLEVKPKDLGLDGHLRRLKRGLFDSWFSPFDTSSTTEAPPENIESITEDDASFDRKD 389
           DN  +    +DL LD  +       FDSW     T+   +APP   + I +  +S D   
Sbjct: 447 DNRIIAGMNRDLALDSDIIGNSPPSFDSW-----TAVPYQAPPPKYDDIFQSGSSHDENH 501

Query: 390 DD 395
           DD
Sbjct: 502 DD 503


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 315 SSTTEAPP--ENIESITEDDASFDRKDDDLDTEGSGYPENRVEPEIKKRP 458
           +S TEAP   EN E+   ++ +  +  D++D EGS YP  +  P + + P
Sbjct: 116 ASHTEAPNDFENHETPNTENNNEVKSIDNVDQEGSVYPTTKEYPYVLEIP 165


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 27.9 bits (59), Expect = 0.89
 Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
 Frame = +3

Query: 147 STFTIQVLKAEDIY--MEAEDVADNEFLEVKP---KDLGLDGHLRRLKRGLFDSWFSPFD 311
           S  T++ L+ E+I+  +  E+  D     + P   ++L L+  +  +    + S      
Sbjct: 570 SNLTLKQLQMENIFASLNLENSFDFGMPLMGPYTQQNLQLEDEISEISSPSYSSDDDRKT 629

Query: 312 TSSTTEAPPENIESITEDDASFDRKDDDLDTEGSGYPENRVEPEIKK 452
            S T  AP +NI    E+  S D  + + + +G+       EP ++K
Sbjct: 630 ISETQPAPKQNINEEFENSTSTDGSETNKNEQGNSLSTPDNEPRLRK 676


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +3

Query: 216 EFLEVKPKDLGLDGHLRRLKRGLFDSWFSPFDTSSTTEAPPENIESITEDDASFDRK-DD 392
           E  EVK KD  ++  ++  K       FSP    +TT +     +S++++D   D   ++
Sbjct: 8   ESTEVKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKKKDSSLNE 67

Query: 393 DLDTEGSGYPENRVE 437
             D + +G+ E+  E
Sbjct: 68  SEDEDFAGFGESASE 82


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 315 SSTTEAPPENIESITEDDASFDRKDDDLDTEGSGYPENRVEPEIKKRPSCYLRSHGTIS 491
           ++TT+ P     +   DD S    D D  T G G  E++     K+R S     HG ++
Sbjct: 575 TTTTKKPKAAKSTAVRDDVSSASSDSDKGTTGLGKSESK--SSRKERRSSTSSGHGLMN 631


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = +3

Query: 240 DLGLDGHLRRLKRGLFDSWFSPFDTSSTTEAPPENIESITEDDASFDRKDDDLDTEGSGY 419
           +L  DGH  R+     D +  P     + EA  E I +  EDD  ++  D  L      Y
Sbjct: 304 ELQADGHYVRM----VDFYGQPRLYIRSPEADSERIINFPEDDPYYNEFDAFLGVVQGRY 359

Query: 420 PENRV 434
           P +R+
Sbjct: 360 PPSRI 364


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 309 DTSSTTEAPPENIESITEDDASFDRKDDDLDTEGSGYPENRVEPEIKK 452
           + +S  E PP+ ++ ITE+D   D   +    E     E+  + EI K
Sbjct: 20  ELTSIFELPPDLLKDITEEDVGTDDSCNKKFLEVQKQKEDEEDEEILK 67


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 285 FDSWFSPFDTSSTTEAPPENIESITEDDASFDRKDDDLDTE 407
           FD     +D +  T     N +S+ ED+     +D+D D E
Sbjct: 314 FDEGSDDYDYAKLTTELVGNTDSLAEDEDDILEEDEDEDEE 354


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 288 DSWFSPFDTSSTTEAPPENIESITEDDASFDRKDDDLDTEGSGYPENRVEPEIKKR 455
           D   SP+ T      P +  E   +DD   + KD + + E     E +++PE  KR
Sbjct: 374 DEMHSPYSTHEPESEPEDQDEPSEKDD---ENKDVEEEQE-QEQEEEQIDPEEAKR 425


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 303 PFDTSSTTEAPPENIESITEDDASFDRKDD 392
           P     ++ A  + +E   EDD  FD  DD
Sbjct: 356 PITQQGSSNADADELEDEDEDDDEFDEDDD 385


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +3

Query: 198 EDVADNEFLEVKPKDLGLDGHLRRLKRGLFDSWFSPFDTSSTTEAPPENIESITE 362
           E   D E+++    D  L   L  LKR + DS     D   ++E+P     ++ E
Sbjct: 202 EREVDEEYIQNFSSDPSLKSSLNDLKRYISDSSSELADVVLSSESPTVQAATVNE 256


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 330  APPENIESITEDDASFDRKDDDLDTEGSGYPENRVEPEIKKRPSCYLRS 476
            AP EN +S++E + ++  K DDL     G+     E  ++ R    LRS
Sbjct: 963  APYEN-DSVSEKEGTYKSKVDDLPFYCIGFKSAMPEYTLRTRIWASLRS 1010


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,714,471
Number of Sequences: 5004
Number of extensions: 30157
Number of successful extensions: 128
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)