Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_K11
         (495 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.2  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 236 GLNFQEFIVCHVLCLHVN 183
           G+N++ ++VC V   +VN
Sbjct: 53  GINWRSYVVCDVAYNNVN 70


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 354 STRCFQGAPQ*SKTCQKAKTN 292
           S  C  GAP  SK CQ+   N
Sbjct: 531 SGSCAPGAPLDSKLCQQCVGN 551


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 354 STRCFQGAPQ*SKTCQKAKTN 292
           S  C  GAP  SK CQ+   N
Sbjct: 531 SGSCAPGAPLDSKLCQQCVGN 551


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 354 STRCFQGAPQ*SKTCQKAKTN 292
           S  C  GAP  SK CQ+   N
Sbjct: 531 SGSCAPGAPLDSKLCQQCVGN 551


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 215 IVCHVLCLHVNVFSLQH 165
           ++CH+LC+    + L H
Sbjct: 291 LICHILCMSDLHWQLPH 307


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/31 (22%), Positives = 15/31 (48%)
 Frame = +3

Query: 276 RGLFDSWFSPFDTSSTTEAPPENIESITEDD 368
           RG+  +W +   T+S+    P     + E++
Sbjct: 348 RGMMQAWMTALGTASSAATLPITFRCLEENN 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,026
Number of Sequences: 438
Number of extensions: 1995
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)