Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_K10
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0170 - 1174224-1174321,1174429-1174588,1174673-1174823,117... 60 1e-09
02_02_0175 - 7465951-7466019,7466410-7466492,7467126-7467289,746... 32 0.34
05_01_0228 + 1692117-1692924,1693321-1693431,1693536-1693675,169... 31 1.0
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 31 1.0
06_01_0789 - 5901888-5902940,5903685-5903824,5904606-5904665,590... 30 1.8
11_01_0656 - 5301048-5301441,5301779-5301976,5302056-5302228,530... 29 3.2
04_03_0021 - 9548600-9548794,9548851-9549006 28 7.4
11_06_0223 - 21419128-21419397,21419493-21419747,21420243-214204... 27 9.7
>02_01_0170 -
1174224-1174321,1174429-1174588,1174673-1174823,
1175005-1175156,1175647-1175768,1176773-1176785
Length = 231
Score = 60.5 bits (140), Expect = 1e-09
Identities = 26/83 (31%), Positives = 49/83 (59%)
Frame = +3
Query: 399 EKLRQQKLQEESDLRLAMETFGVTEGNIGKLDNFHPTTKEEYTEFADLLTKKITFYKAKD 578
EKLRQQ+L EE+D + E FG +G+ LD F P ++ ++ E+A+L+ K+ Y+
Sbjct: 90 EKLRQQRLVEEADFKSTTELFGKKDGSEKSLDTFIPKSESDFAEYAELIANKLRPYEKSF 149
Query: 579 EFPGFIDDLVKNILVXMSSADIR 647
+ G + ++++ + + AD +
Sbjct: 150 HYMGLLKNVMRLSMASLKGADAK 172
>02_02_0175 -
7465951-7466019,7466410-7466492,7467126-7467289,
7467385-7467640,7467830-7467935,7467962-7468007,
7468316-7468388,7468508-7468577
Length = 288
Score = 32.3 bits (70), Expect = 0.34
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Frame = +3
Query: 354 TEKTAEEMTPEQKLAEK--LRQQKLQEES-DLRLAMETFGVTEGNIGKLDNFHPTTKEEY 524
TEK E T QK+A+K L +Q+++ S D + E F KLD + + EY
Sbjct: 141 TEKLEEVHTAYQKMAKKCQLMEQEVENLSRDKQELQEKFAEKSRQKRKLDEMYDQLRSEY 200
Query: 525 TEFADLLTKKITFYKAKDEFPGFIDDLVKNILVXMSSAD 641
K+ A + FP DL + M S+D
Sbjct: 201 ES-----AKRSAIQPANNYFPRAQPDLFSGVPNIMDSSD 234
>05_01_0228 +
1692117-1692924,1693321-1693431,1693536-1693675,
1693865-1694075,1694148-1694415,1694543-1694696,
1694795-1695123,1695748-1695835
Length = 702
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -3
Query: 493 SSLPMLPSVTPKVSMASRKSDSSCSFCWRSFSANFCSGVISSA 365
SS LPSV+P+V A++ CWRS +A C+ +++A
Sbjct: 191 SSASALPSVSPRVYAAAQ--------CWRSLNATACAACVATA 225
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Frame = +3
Query: 348 LVTEKTAEEM-TPEQKLAEK-----LRQQKLQEESDLRLAMETFGVTEGNI 482
L EK E+M T EQKLA+K Q LQ+E R+ +ET ++ GN+
Sbjct: 1136 LELEKAEEKMQTMEQKLADKNEMVDFLQLSLQDEGKKRVEVETALISSGNL 1186
>06_01_0789 -
5901888-5902940,5903685-5903824,5904606-5904665,
5904794-5904854
Length = 437
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +3
Query: 366 AEEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNIGKLD 494
++ +T + L ++L ++QEESDLR+ ++ F ++ KLD
Sbjct: 107 SKSLTSKLYLKQQLYGLQMQEESDLRMHVDVFNQLIVDLSKLD 149
>11_01_0656 -
5301048-5301441,5301779-5301976,5302056-5302228,
5302691-5302935,5303014-5303191,5303578-5303760,
5303858-5303962,5304621-5304758,5304846-5305802
Length = 856
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +3
Query: 480 IGKLDNFHPTTKEEYTEFADLLTKKITF---YKAKDEFPGFIDDLVKNIL 620
+G LD F P EY F D + K YK KDE F+ D+ + L
Sbjct: 552 MGDLDAFFPAATREYAPFVDEMWKDPAIQATYKRKDEL-HFLPDVAEYFL 600
>04_03_0021 - 9548600-9548794,9548851-9549006
Length = 116
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/52 (23%), Positives = 26/52 (50%)
Frame = +3
Query: 363 TAEEMTPEQKLAEKLRQQKLQEESDLRLAMETFGVTEGNIGKLDNFHPTTKE 518
T +++TPEQK + RQ + + ++L + G + G++ +T +
Sbjct: 39 TLDKLTPEQKKDLETRQGTIVQRYKMKLVADVAGTSSSKDGEIQQVSDSTTQ 90
>11_06_0223 -
21419128-21419397,21419493-21419747,21420243-21420414,
21420530-21420757,21420916-21421049,21421309-21421392,
21421554-21421760,21421871-21422203,21422343-21422449,
21422823-21422988,21423127-21423230,21423347-21423507,
21423595-21424495,21424642-21424732,21424837-21425127,
21425491-21425575,21425665-21425747,21427653-21427773,
21427785-21428260
Length = 1422
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 33 SCPDFGVQVKSFHINSAADSGVLKMDVSWDADNFEP-KLPTTLAASNKWE 179
S P+F + KSFH+ +M + +D + P L TT + WE
Sbjct: 505 SVPEFAQRFKSFHVGQKMQK---EMQIPYDKSSTHPAALTTTKYGLSSWE 551
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,383,979
Number of Sequences: 37544
Number of extensions: 226079
Number of successful extensions: 758
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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