Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_K10
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF497825-1|AAM18103.1|  670|Caenorhabditis elegans putative Na-H...    28   5.0  
AF016447-15|AAR30208.1|  651|Caenorhabditis elegans Na/h exchang...    28   5.0  
AF016447-14|AAG24015.2|  670|Caenorhabditis elegans Na/h exchang...    28   5.0  
AL021180-1|CAA15980.1|  383|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF303252-1|AAG50210.1|  383|Caenorhabditis elegans 3E324 protein.      28   6.6  
AF016452-10|AAB66019.1|  620|Caenorhabditis elegans Gastrulation...    28   6.6  

>AF497825-1|AAM18103.1|  670|Caenorhabditis elegans putative Na-H
           exchanger isoform 3 protein.
          Length = 670

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
 Frame = +3

Query: 363 TAEEMTPEQKLAEKLRQQKLQE-ESDLRLAMETFGVTEGNIGKLDNFHPTTK---EEYTE 530
           T E+     K+   L+ ++L++ +S++R+A E   VT  ++ +L  F  + +   + YT 
Sbjct: 523 TLEDAIKLTKVKSTLQNKRLEKVKSEVRVAPEQTTVTPKDV-QLARFMQSGENIDQLYTL 581

Query: 531 FADLLTKKITFYKAK 575
           F+DLL KK+   K +
Sbjct: 582 FSDLLDKKLNELKVQ 596


>AF016447-15|AAR30208.1|  651|Caenorhabditis elegans Na/h exchanger
           protein 3, isoform b protein.
          Length = 651

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
 Frame = +3

Query: 363 TAEEMTPEQKLAEKLRQQKLQE-ESDLRLAMETFGVTEGNIGKLDNFHPTTK---EEYTE 530
           T E+     K+   L+ ++L++ +S++R+A E   VT  ++ +L  F  + +   + YT 
Sbjct: 504 TLEDAIKLTKVKSTLQNKRLEKVKSEVRVAPEQTTVTPKDV-QLARFMQSGENIDQLYTL 562

Query: 531 FADLLTKKITFYKAK 575
           F+DLL KK+   K +
Sbjct: 563 FSDLLDKKLNELKVQ 577


>AF016447-14|AAG24015.2|  670|Caenorhabditis elegans Na/h exchanger
           protein 3, isoform a protein.
          Length = 670

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
 Frame = +3

Query: 363 TAEEMTPEQKLAEKLRQQKLQE-ESDLRLAMETFGVTEGNIGKLDNFHPTTK---EEYTE 530
           T E+     K+   L+ ++L++ +S++R+A E   VT  ++ +L  F  + +   + YT 
Sbjct: 523 TLEDAIKLTKVKSTLQNKRLEKVKSEVRVAPEQTTVTPKDV-QLARFMQSGENIDQLYTL 581

Query: 531 FADLLTKKITFYKAK 575
           F+DLL KK+   K +
Sbjct: 582 FSDLLDKKLNELKVQ 596


>AL021180-1|CAA15980.1|  383|Caenorhabditis elegans Hypothetical
           protein Y44F5A.1 protein.
          Length = 383

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 57  VKSFHINSAADSGVLKMDVSWDADNFEPKLPTTLAASNKWEGEDEDDN 200
           +KS  + +A +SG +K   +W   N +P++ +  A   KW+ +DED N
Sbjct: 108 LKSQQLATADESGEVK---TW---NLDPEVASENANIRKWQEQDEDIN 149


>AF303252-1|AAG50210.1|  383|Caenorhabditis elegans 3E324 protein.
          Length = 383

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 57  VKSFHINSAADSGVLKMDVSWDADNFEPKLPTTLAASNKWEGEDEDDN 200
           +KS  + +A +SG +K   +W   N +P++ +  A   KW+ +DED N
Sbjct: 108 LKSQQLATADESGEVK---TW---NLDPEVASENANIRKWQEQDEDIN 149


>AF016452-10|AAB66019.1|  620|Caenorhabditis elegans Gastrulation
           defective protein 1 protein.
          Length = 620

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 60  KSFHINSAADSGVLKMDVSWDADNFEPKLP 149
           +S  ++S ++SGV    VS D D+F P LP
Sbjct: 42  QSVSVSSKSESGVSSSAVSDDEDDFMPDLP 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,694,871
Number of Sequences: 27780
Number of extensions: 203792
Number of successful extensions: 727
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)