Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_K08
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    27   1.5  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   4.6  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   4.6  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   4.6  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   4.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   6.1  
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    25   8.1  

>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
 Frame = -1

Query: 376  LGRCAGIVGVDIQASTDNSSALHDDLVTVSRSSRN----AVQDFDRQNVAQVERVEVNRI 209
            LG C  +      +ST N+  +HD L  VS+   N        +    +   E VE  ++
Sbjct: 1022 LGACGDVARNVTCSSTPNNETIHDQLFAVSKQISNELLPTTSSYHEIWIEDPETVEKRKV 1081

Query: 208  LGVA 197
             G A
Sbjct: 1082 AGEA 1085


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 104 ETGYCIKCYQCNSEQDKNCG 163
           ++ YC+KC+Q    +  +CG
Sbjct: 398 QSHYCLKCFQVKPPRSYHCG 417


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 93  WRCSKQVIASSATNVTVNRIRTA 161
           W+C K  + +S+TNV ++ +R A
Sbjct: 176 WKCIKSNLNTSSTNVLLSALRCA 198


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 417 RAVSDRGVGGELDNSAGVLESL-GLTSKQVRTTVPLFMTIL*QYLGAPVTLF 265
           R V+D+        S  V++SL    S  +    PLF   L Q+LG+P ++F
Sbjct: 485 RIVTDKIGSSATSGSFPVIKSLMDKRSMWLEKLQPLFQDKLTQHLGSPTSIF 536


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 83  RRRMLHFLPCLFYNYYSVVVXQACFV 6
           R     FL C + N YS+ V  + FV
Sbjct: 137 RNHKFFFLECFYLNLYSICVLYSTFV 162


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 185  PPVECNTQDSINFNTLYLRNILPVEVLNSVTGAPRYC 295
            PPV    +DSI    + L++++ + +L+  T A R C
Sbjct: 981  PPVYRKKEDSIYLLDMCLQSVVNIPLLSIKTTAQRNC 1017


>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 370 RCAGIVGVDIQASTDN 323
           RCAG   VD++A+ DN
Sbjct: 75  RCAGFNNVDLKAAADN 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,173
Number of Sequences: 5004
Number of extensions: 37603
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)