Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_K08
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.      27   5.5  
AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog ...    27   5.5  
AF067217-3|AAF99975.3|  479|Caenorhabditis elegans Hypothetical ...    27   5.5  
U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astaci...    27   7.3  
Z50176-3|CAA90540.1|  196|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormo...    27   9.7  

>Z81493-1|CAB04039.1|  178|Caenorhabditis elegans Hypothetical
           protein F01D5.1 protein.
          Length = 178

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 104 ETGYCIKCYQCNSEQDKNCGDPFKSAKPPV--ECNTQDSI 217
           + GYC KC+   SE++K C        P    +CN+ +++
Sbjct: 130 KNGYCNKCFYKCSEREKYCAKSCGFCTPGTCKDCNSLETL 169


>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical
           protein F09E8.3 protein.
          Length = 1369

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +2

Query: 167 PFKSAKPPVECNTQDSINFNTLYLRNILPVEVLNSVT-GAPRYCHKIVMK-SGTVVRTCL 340
           P KS K     N  + I+FNT+   +ILP E  N  T G  R  ++++ K   TV + CL
Sbjct: 265 PIKSIKTFTLGNLVE-IDFNTIQALDILPKETENKKTFGQGRSLYQLMDKCRSTVGKKCL 323


>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
          Length = 1369

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +2

Query: 167 PFKSAKPPVECNTQDSINFNTLYLRNILPVEVLNSVT-GAPRYCHKIVMK-SGTVVRTCL 340
           P KS K     N  + I+FNT+   +ILP E  N  T G  R  ++++ K   TV + CL
Sbjct: 265 PIKSIKTFTLGNLVE-IDFNTIQALDILPKETENKKTFGQGRSLYQLMDKCRSTVGKKCL 323


>AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog
           protein.
          Length = 933

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +2

Query: 167 PFKSAKPPVECNTQDSINFNTLYLRNILPVEVLNSVT-GAPRYCHKIVMK-SGTVVRTCL 340
           P KS K     N  + I+FNT+   +ILP E  N  T G  R  ++++ K   TV + CL
Sbjct: 265 PIKSIKTFTLGNLVE-IDFNTIQALDILPKETENKKTFGQGRSLYQLMDKCRSTVGKKCL 323


>AF067217-3|AAF99975.3|  479|Caenorhabditis elegans Hypothetical
           protein F56A6.4 protein.
          Length = 479

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 88  NSEGECYTFCHVYFIIIIQW 29
           NS+ E YTFCHV   +I  W
Sbjct: 187 NSKCELYTFCHVGKTVIDTW 206


>U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astacin
           protease protein33 protein.
          Length = 644

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
 Frame = +2

Query: 125 CYQCNSEQDKNCGDP---FKSAKPPVECNTQDSINFNTLYLRNILPVEVLNSVTGAPRY- 292
           C  C ++  + C       +SAK    CNTQ      T   R++L  ++ + V     + 
Sbjct: 563 CGSCGTQYRERCTSTTNCLRSAKQTRVCNTQPCAQGTTRGKRSVLQTQISHRVKRLNGWC 622

Query: 293 CHKIVMKSGTVV 328
           C + V+  G  V
Sbjct: 623 CARFVLSRGVCV 634


>Z50176-3|CAA90540.1|  196|Caenorhabditis elegans Hypothetical
           protein C09G1.3 protein.
          Length = 196

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 367 TCRVVELASNTAIADSAKVKSCAVCNKDN 453
           +C+V++ A ++ +ADS K     VC   N
Sbjct: 51  SCKVIDWAESSRVADSLKRGDLQVCTPSN 79


>AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 266 protein.
          Length = 920

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 438 HSAGLDLRAVSDRGVGGELDNSAGVLESL 352
           H A LDL    DRGV   L+N   ++  +
Sbjct: 312 HDARLDLSVFKDRGVSDSLENVLDIISRI 340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,291,939
Number of Sequences: 27780
Number of extensions: 234204
Number of successful extensions: 712
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)