Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_K08
         (490 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.3  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   7.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   7.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 456 TVVLVAHSAGLDLRAVSDRGVGGELDNSAGVLESLGLTSKQVR 328
           T+++       DL+ + +    GE+D S   L+SL  T+ Q++
Sbjct: 74  TIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLK 116


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 200 NTQDSINFNTLYLRNILPVEVLNSVTGAPRYC 295
           N  ++ N+N     NI+ +E +      P YC
Sbjct: 101 NNYNNNNYNKKLYYNIINIEQIPVPVPVPVYC 132


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 200 NTQDSINFNTLYLRNILPVEVLNSVTGAPRYC 295
           N  ++ N+N     NI+ +E +      P YC
Sbjct: 101 NNYNNNNYNKKLYYNIINIEQIPVPVPVPVYC 132


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 166 VPAVLILFTVTLVALDAITCFEQRQ*NSE 80
           V  ++ LFT   V LDA+T  + +Q   E
Sbjct: 472 VSQLVTLFTDFYVDLDAVTGHQSQQQQEE 500


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 102 SKQVIASSATNVT 140
           ++ V+ASSA+NVT
Sbjct: 945 AQSVVASSASNVT 957


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,244
Number of Sequences: 438
Number of extensions: 2653
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)