Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_J22
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078... 29 2.5
07_01_1133 - 10550799-10551137,10552195-10552254,10555693-105574... 29 3.3
03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376 29 4.3
07_03_1759 + 29285262-29287208 28 5.7
12_01_0500 + 3966456-3968556,3968640-3969087,3969524-3969718,396... 28 7.5
05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635 28 7.5
09_04_0457 - 17736158-17737336 27 9.9
01_01_0469 - 3456067-3456123,3456414-3456565,3456649-3456779,345... 27 9.9
>08_02_1332 +
26207164-26207257,26207454-26207530,26207771-26207841,
26208448-26208502,26209066-26209187,26209272-26209353,
26210070-26210160,26210759-26210982,26211294-26211413,
26211523-26211705
Length = 372
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 189 DGPQGSLRRLRNQLAEDGCAESQVVLAKQLLEEKCELEADKISNF 323
DG + R+RNQL ED ++ AK L+E K LE ++ F
Sbjct: 150 DGQERERGRIRNQLQED--KRERIRAAKDLMEAKRTLEENQRKRF 192
>07_01_1133 -
10550799-10551137,10552195-10552254,10555693-10557401,
10557534-10557616,10577533-10578074
Length = 910
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 420 EDSAAIVRAKSCLAASRQETVARKAARDL 506
E+ I++ +SC+A SRQ++ A RDL
Sbjct: 651 EEKVKIIQERSCIAQSRQKSYADNRHRDL 679
>03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376
Length = 798
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -2
Query: 523 FDKLANRSLAAFLATVSCLLAARQDLARTIAALSSSMTPLRIHLLKSLL 377
F ++ +R LA++ A +S L RQ L AAL+S P + SLL
Sbjct: 71 FRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLL 119
>07_03_1759 + 29285262-29287208
Length = 648
Score = 28.3 bits (60), Expect = 5.7
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Frame = +3
Query: 240 GCAESQVVLAKQLLEEKCELEADKISNFKQALEW------LICATEQAHPEARRLLRRC- 398
GC S++ A LL K L D+ ++F + LE L +QA A L R
Sbjct: 466 GCTRSELERAHLLLTLK--LRPDRCASFAERLELVDEHRDLEAVRDQARMSALSLYRMLQ 523
Query: 399 -----IRSGVIDEDSAAIVRAKSCLAASRQETVARKAA 497
I S V DE++A RAK AA+ A AA
Sbjct: 524 KGYSFIMSVVQDEEAAERQRAKDAAAATAAAAAAAAAA 561
>12_01_0500 +
3966456-3968556,3968640-3969087,3969524-3969718,
3969891-3970119
Length = 990
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +3
Query: 351 ATEQAHPEARRLLRRCIRSGVIDEDSAAIVRAKSCLAASRQETVARKAARDLFASLSNG 527
ATE+ +P A + L ++ +++E ++A+ + S E+ A K ARD + SNG
Sbjct: 387 ATEKINPAAEQELLPSGQAELLNETASAVAQNGS-FPTQASESSAEKKARDRNKNKSNG 444
>05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635
Length = 819
Score = 27.9 bits (59), Expect = 7.5
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -2
Query: 517 KLANRSLAAFLATVSCLLAARQDLARTIAALSSSMTPLRIHLLKS---LLASGCACSVAH 347
+L R L A + LL + R+ +A SS+ P +HLL S LL+S + AH
Sbjct: 86 RLLRRHLRAEVLRRHPLLLSHLLSLRSASASLSSL-PSHLHLLSSHLSLLSSHLSAPRAH 144
Query: 346 MSHSKACL 323
++HS + L
Sbjct: 145 LAHSSSSL 152
>09_04_0457 - 17736158-17737336
Length = 392
Score = 27.5 bits (58), Expect = 9.9
Identities = 25/79 (31%), Positives = 35/79 (44%)
Frame = +3
Query: 162 GGRKRWNLHDGPQGSLRRLRNQLAEDGCAESQVVLAKQLLEEKCELEADKISNFKQALEW 341
GGR ++ P+ R R Q D Q VLA +++A K + K ALE
Sbjct: 73 GGRGDYSTTPLPRSGAARSRRQRGLD-----QSVLATFPTMAYADVKAHK--SVKGALEC 125
Query: 342 LICATEQAHPEARRLLRRC 398
+C +E E RLL +C
Sbjct: 126 AVCISEFDDDETLRLLPKC 144
>01_01_0469 -
3456067-3456123,3456414-3456565,3456649-3456779,
3456846-3458036,3458460-3458541,3458947-3458984,
3459091-3459250,3459356-3459557,3460245-3460329,
3460809-3460863,3461230-3461325,3461807-3461940,
3462031-3462043,3462315-3462419,3462935-3463121
Length = 895
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +3
Query: 228 LAEDGCAESQVVLAKQLLEEKCELEADKISNFKQALEWLICATEQAHPEARRLLR 392
LA++G + + L L + + D+I + ++ T QA+P+ R +R
Sbjct: 673 LADNGTFQGDIELTDLLTRKNSDKNEDRIEKLSKPETKMLTETPQAYPDHRNEMR 727
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,166,525
Number of Sequences: 37544
Number of extensions: 337966
Number of successful extensions: 783
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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