Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_J22
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132949-1|CAB61068.2|  463|Caenorhabditis elegans Hypothetical ...    33   0.18 
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p...    32   0.41 
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr...    32   0.41 
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos...    32   0.41 
Z74028-6|CAI91174.1|  674|Caenorhabditis elegans Hypothetical pr...    31   0.72 
Z74028-5|CAA98427.1|  677|Caenorhabditis elegans Hypothetical pr...    31   0.72 
Z81500-4|CAB04097.1|  254|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AL117204-24|CAB55152.1|  298|Caenorhabditis elegans Hypothetical...    28   6.7  

>AL132949-1|CAB61068.2|  463|Caenorhabditis elegans Hypothetical
           protein Y53F4B.1 protein.
          Length = 463

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +3

Query: 234 EDGCAESQVVLAKQLLEEKCELEADKISNFKQALEWLICATEQAHPEARRLLRR 395
           ED CA  Q    K    +K ++   K ++  + +EW +  T+++ P  ++LL +
Sbjct: 249 EDDCAVGQRAFLKMYNNKKYDMSGCKSNSICETIEWCLNNTQESRPTFKQLLSK 302


>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
            protein F20G4.3 protein.
          Length = 2003

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 28/107 (26%), Positives = 47/107 (43%)
 Frame = +3

Query: 255  QVVLAKQLLEEKCELEADKISNFKQALEWLICATEQAHPEARRLLRRCIRSGVIDEDSAA 434
            +V  +KQL++ K  LEA  ++     LE      E+         RR   + + +E  + 
Sbjct: 1028 EVERSKQLVKAKARLEAT-VAEINDELE-----KEKQQRHNAETARRAAETQLREEQESC 1081

Query: 435  IVRAKSCLAASRQETVARKAARDLFASLSNGEQYITTVQLERRIREI 575
            + + +     + Q  + RK +     S+ N E+     QLER IREI
Sbjct: 1082 LEKTRKAEELTNQ--LMRKESELSQISIRNDEELAARQQLEREIREI 1126


>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
            F20G4.3 protein.
          Length = 2003

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 28/107 (26%), Positives = 47/107 (43%)
 Frame = +3

Query: 255  QVVLAKQLLEEKCELEADKISNFKQALEWLICATEQAHPEARRLLRRCIRSGVIDEDSAA 434
            +V  +KQL++ K  LEA  ++     LE      E+         RR   + + +E  + 
Sbjct: 1028 EVERSKQLVKAKARLEAT-VAEINDELE-----KEKQQRHNAETARRAAETQLREEQESC 1081

Query: 435  IVRAKSCLAASRQETVARKAARDLFASLSNGEQYITTVQLERRIREI 575
            + + +     + Q  + RK +     S+ N E+     QLER IREI
Sbjct: 1082 LEKTRKAEELTNQ--LMRKESELSQISIRNDEELAARQQLEREIREI 1126


>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
            heavy chain II protein.
          Length = 2003

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 28/107 (26%), Positives = 47/107 (43%)
 Frame = +3

Query: 255  QVVLAKQLLEEKCELEADKISNFKQALEWLICATEQAHPEARRLLRRCIRSGVIDEDSAA 434
            +V  +KQL++ K  LEA  ++     LE      E+         RR   + + +E  + 
Sbjct: 1028 EVERSKQLVKAKARLEAT-VAEINDELE-----KEKQQRHNAETARRAAETQLREEQESC 1081

Query: 435  IVRAKSCLAASRQETVARKAARDLFASLSNGEQYITTVQLERRIREI 575
            + + +     + Q  + RK +     S+ N E+     QLER IREI
Sbjct: 1082 LEKTRKAEELTNQ--LMRKESELSQISIRNDEELAARQQLEREIREI 1126


>Z74028-6|CAI91174.1|  674|Caenorhabditis elegans Hypothetical
           protein C14C10.3b protein.
          Length = 674

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 432 AIVRAKSCLAASRQETVARKAARDLFASLSNGEQYITTVQLERRIREI 575
           A +  K+CL A RQ         D F  L N   +  +VQ +++IRE+
Sbjct: 11  ATILNKTCLTAVRQSLKHTDGRFDYFRYLGNDASHAISVQKDQQIREV 58


>Z74028-5|CAA98427.1|  677|Caenorhabditis elegans Hypothetical
           protein C14C10.3a protein.
          Length = 677

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 432 AIVRAKSCLAASRQETVARKAARDLFASLSNGEQYITTVQLERRIREI 575
           A +  K+CL A RQ         D F  L N   +  +VQ +++IRE+
Sbjct: 11  ATILNKTCLTAVRQSLKHTDGRFDYFRYLGNDASHAISVQKDQQIREV 58


>Z81500-4|CAB04097.1|  254|Caenorhabditis elegans Hypothetical
           protein F11D11.5 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 207 LRRLRNQLAEDGCAESQVVLAKQLLEEKCELEADKISN 320
           L ++  Q+A++ C E   VLA+    E+CE +   + N
Sbjct: 131 LEKVTQQVAKERCIEESAVLARVETSEECEWKHGFVEN 168


>AL117204-24|CAB55152.1|  298|Caenorhabditis elegans Hypothetical
           protein Y116A8C.37 protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 618 NRCLRPLSSVTSYCKSLLSDVRVEPLLCIVHHSTNWQ 508
           N+ +     +T YC  +L D     LL  V+H  NW+
Sbjct: 208 NKKVESAVGMTEYCLEILPDGCSNSLLTTVYHMHNWR 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,065,274
Number of Sequences: 27780
Number of extensions: 293192
Number of successful extensions: 628
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)