Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_J22
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     25   0.84 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   5.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   5.9  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = +1

Query: 262 YWLNSSWKKNVSLR--LTRYQI 321
           ++L   WKKN++LR  +T+Y I
Sbjct: 88  FYLGKEWKKNLNLRDSVTKYLI 109


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 115 FPIYFIYPQ*LLYLKIVLFVCFD 47
           FP+ F+    LL+ +++ FVC D
Sbjct: 8   FPVLFVIINVLLHGQVICFVCKD 30


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
 Frame = +3

Query: 213 RLRNQLAE-DGCAESQVVLA-------KQLLEEKCELEADKISNFKQALEWLICATEQAH 368
           RLRN L E +   +S V L        K+ L++   L  D+I ++K  L+   C+T Q++
Sbjct: 100 RLRNDLFECENKEKSNVCLKFEEQKRRKKSLDDVKILRNDRIDSYKSNLKCDKCSTYQSN 159

Query: 369 PE 374
            E
Sbjct: 160 GE 161


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 258 VVLAKQLLEEKCELEADKISNFKQALEWL 344
           VVL  +  + +  LEA + SN  Q  +WL
Sbjct: 200 VVLFTRAEDARGILEAARRSNLSQPFQWL 228


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 258 VVLAKQLLEEKCELEADKISNFKQALEWL 344
           VVL  +  + +  LEA + SN  Q  +WL
Sbjct: 290 VVLFTRAEDARGILEAARRSNLSQPFQWL 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,883
Number of Sequences: 438
Number of extensions: 3584
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)